Fast Analysis of Superoxide Dismutase (SOD) Activity in Barley Leaves Using Visible and Near Infrared Spectroscopy

Visible and near infrared (Vis/NIR) spectroscopy was investigated for the fast analysis of superoxide dismutase (SOD) activity in barley (<em>Hordeum</em> <em>vulgare</em> L.) leaves. Seven different spectra preprocessing methods were compared....

Full description

Bibliographic Details
Main Authors: Fei Liu, Yun Zhao, Wenwen Kong, Yong He, Tian Tian, Weijun Zhou
Format: Article
Language:English
Published: MDPI AG 2012-08-01
Series:Sensors
Subjects:
Online Access:http://www.mdpi.com/1424-8220/12/8/10871
id doaj-5693f8ef80e541eaa2862d288eeb3642
record_format Article
spelling doaj-5693f8ef80e541eaa2862d288eeb36422020-11-24T21:44:38ZengMDPI AGSensors1424-82202012-08-01128108711088010.3390/s120810871Fast Analysis of Superoxide Dismutase (SOD) Activity in Barley Leaves Using Visible and Near Infrared SpectroscopyFei LiuYun ZhaoWenwen KongYong HeTian TianWeijun ZhouVisible and near infrared (Vis/NIR) spectroscopy was investigated for the fast analysis of superoxide dismutase (SOD) activity in barley (<em>Hordeum</em> <em>vulgare</em> L.) leaves. Seven different spectra preprocessing methods were compared. Four regression methods were used for comparison of prediction performance, including partial least squares (PLS), multiple linear regression (MLR), least squares-support vector machine (LS-SVM) and Gaussian process regress (GPR). Successive projections algorithm (SPA) and regression coefficients (RC) were applied to select effective wavelengths (EWs) to develop more parsimonious models. The results indicated that Savitzky-Golay smoothing (SG) and multiplicative scatter correction (MSC) should be selected as the optimum preprocessing methods. The best prediction performance was achieved by the LV-LS-SVM model on SG spectra, and the correlation coefficients (<em>r</em>) and root mean square error of prediction (RMSEP) were 0.9064 and 0.5336, respectively. The conclusion was that Vis/NIR spectroscopy combined with multivariate analysis could be successfully applied for the fast estimation of SOD activity in barley leaves.http://www.mdpi.com/1424-8220/12/8/10871visible and near infrared spectroscopybarleysuperoxide dismutasevariable selectionleast squares-support vector machineGaussian process regression
collection DOAJ
language English
format Article
sources DOAJ
author Fei Liu
Yun Zhao
Wenwen Kong
Yong He
Tian Tian
Weijun Zhou
spellingShingle Fei Liu
Yun Zhao
Wenwen Kong
Yong He
Tian Tian
Weijun Zhou
Fast Analysis of Superoxide Dismutase (SOD) Activity in Barley Leaves Using Visible and Near Infrared Spectroscopy
Sensors
visible and near infrared spectroscopy
barley
superoxide dismutase
variable selection
least squares-support vector machine
Gaussian process regression
author_facet Fei Liu
Yun Zhao
Wenwen Kong
Yong He
Tian Tian
Weijun Zhou
author_sort Fei Liu
title Fast Analysis of Superoxide Dismutase (SOD) Activity in Barley Leaves Using Visible and Near Infrared Spectroscopy
title_short Fast Analysis of Superoxide Dismutase (SOD) Activity in Barley Leaves Using Visible and Near Infrared Spectroscopy
title_full Fast Analysis of Superoxide Dismutase (SOD) Activity in Barley Leaves Using Visible and Near Infrared Spectroscopy
title_fullStr Fast Analysis of Superoxide Dismutase (SOD) Activity in Barley Leaves Using Visible and Near Infrared Spectroscopy
title_full_unstemmed Fast Analysis of Superoxide Dismutase (SOD) Activity in Barley Leaves Using Visible and Near Infrared Spectroscopy
title_sort fast analysis of superoxide dismutase (sod) activity in barley leaves using visible and near infrared spectroscopy
publisher MDPI AG
series Sensors
issn 1424-8220
publishDate 2012-08-01
description Visible and near infrared (Vis/NIR) spectroscopy was investigated for the fast analysis of superoxide dismutase (SOD) activity in barley (<em>Hordeum</em> <em>vulgare</em> L.) leaves. Seven different spectra preprocessing methods were compared. Four regression methods were used for comparison of prediction performance, including partial least squares (PLS), multiple linear regression (MLR), least squares-support vector machine (LS-SVM) and Gaussian process regress (GPR). Successive projections algorithm (SPA) and regression coefficients (RC) were applied to select effective wavelengths (EWs) to develop more parsimonious models. The results indicated that Savitzky-Golay smoothing (SG) and multiplicative scatter correction (MSC) should be selected as the optimum preprocessing methods. The best prediction performance was achieved by the LV-LS-SVM model on SG spectra, and the correlation coefficients (<em>r</em>) and root mean square error of prediction (RMSEP) were 0.9064 and 0.5336, respectively. The conclusion was that Vis/NIR spectroscopy combined with multivariate analysis could be successfully applied for the fast estimation of SOD activity in barley leaves.
topic visible and near infrared spectroscopy
barley
superoxide dismutase
variable selection
least squares-support vector machine
Gaussian process regression
url http://www.mdpi.com/1424-8220/12/8/10871
work_keys_str_mv AT feiliu fastanalysisofsuperoxidedismutasesodactivityinbarleyleavesusingvisibleandnearinfraredspectroscopy
AT yunzhao fastanalysisofsuperoxidedismutasesodactivityinbarleyleavesusingvisibleandnearinfraredspectroscopy
AT wenwenkong fastanalysisofsuperoxidedismutasesodactivityinbarleyleavesusingvisibleandnearinfraredspectroscopy
AT yonghe fastanalysisofsuperoxidedismutasesodactivityinbarleyleavesusingvisibleandnearinfraredspectroscopy
AT tiantian fastanalysisofsuperoxidedismutasesodactivityinbarleyleavesusingvisibleandnearinfraredspectroscopy
AT weijunzhou fastanalysisofsuperoxidedismutasesodactivityinbarleyleavesusingvisibleandnearinfraredspectroscopy
_version_ 1725908884898447360