Structural prediction of RNA switches using conditional base-pair probabilities.
An RNA switch triggers biological functions by toggling between two conformations. RNA switches include bacterial riboswitches, where ligand binding can stabilize a bound structure. For RNAs with only one stable structure, structural prediction usually just requires a straightforward free energy min...
Main Authors: | Amirhossein Manzourolajdad, John L Spouge |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2019-01-01
|
Series: | PLoS ONE |
Online Access: | https://doi.org/10.1371/journal.pone.0217625 |
Similar Items
-
Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic.
by: Amirhossein Manzourolajdad, et al.
Published: (2016-01-01) -
Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.
by: Michael F Sloma, et al.
Published: (2017-11-01) -
Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities
by: Taichi Hagio, et al.
Published: (2018-02-01) -
Partition function and base pairing probabilities of RNA heterodimers
by: Stadler Peter F, et al.
Published: (2006-03-01) -
Pairwise visual comparison of small RNA secondary structures with base pair probabilities
by: Serge Léger, et al.
Published: (2019-05-01)