Taxonomic evaluation of selected Ganoderma species and database sequence validation

• Main Authors: Suldbold Jargalmaa, John A. Eimes, Myung Soo Park, Jae Young Park, Seung-Yoon Oh, Young Woon Lim
• Format: Article
• Language: English
• Published: PeerJ Inc. 2017-07-01
• Series: PeerJ
• Subjects: Ganoderma; Polypores; Medicinal fungi; Genbank sequence validation
• Online Access: https://peerj.com/articles/3596.pdf

Species in the genus Ganoderma include several ecologically important and pathogenic fungal species whose medicinal and economic value is substantial. Due to the highly similar morphological features within the Ganoderma, identification of species has relied heavily on DNA sequencing using BLAST searches, which are only reliable if the GenBank submissions are accurately labeled. In this study, we examined 113 specimens collected from 1969 to 2016 from various regions in Korea using morphological features and multigene analysis (internal transcribed spacer, translation elongation factor 1-α, and the second largest subunit of RNA polymerase II). These specimens were identified as four Ganoderma species: G. sichuanense, G. cf. adspersum, G. cf. applanatum, and G. cf. gibbosum. With the exception of G. sichuanense, these species were difficult to distinguish based solely on morphological features. However, phylogenetic analysis at three different loci yielded concordant phylogenetic information, and supported the four species distinctions with high bootstrap support. A survey of over 600 Ganoderma sequences available on GenBank revealed that 65% of sequences were either misidentified or ambiguously labeled. Here, we suggest corrected annotations for GenBank sequences based on our phylogenetic validation and provide updated global distribution patterns for these Ganoderma species.