The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by Next-Generation Sequencing and phylogenetic implication (Orthoptera, Meconematinae)

Xizicus Gorochov, 1993, the quiet-calling katydid, is a diverse genus with 68 species in world, which includes more than 45 species in China, has undergone numerous taxonomic revisions with contradicting conclusions. In this study the complete mitochondrial genome of Xiz...

Full description

Bibliographic Details
Main Authors: Mao Shaoli, Yuan Hao, Lu Chao, Zhou Yafu, Shi Fuming, Wang Yuchao
Format: Article
Language:English
Published: Pensoft Publishers 2018-07-01
Series:ZooKeys
Online Access:https://zookeys.pensoft.net/articles.php?id=24156
id doaj-50b5b6291e714e13b9da59f18fa23200
record_format Article
spelling doaj-50b5b6291e714e13b9da59f18fa232002020-11-24T21:33:58ZengPensoft PublishersZooKeys1313-29891313-29702018-07-01773576710.3897/zookeys.773.2415624156The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by Next-Generation Sequencing and phylogenetic implication (Orthoptera, Meconematinae)Mao Shaoli0Yuan Hao1Lu Chao2Zhou Yafu3Shi Fuming4Wang Yuchao5Institute of Botany of Shaanxi ProvinceShaanxi Normal UniversityShaanxi Normal UniversityInstitute of Botany of Shaanxi ProvinceHebei UniversityInstitute of Botany of Shaanxi Province Xizicus Gorochov, 1993, the quiet-calling katydid, is a diverse genus with 68 species in world, which includes more than 45 species in China, has undergone numerous taxonomic revisions with contradicting conclusions. In this study the complete mitochondrial genome of Xizicus (Haploxizicus) maculatus collected from Hainan for the first time was sequenced using the Next-Generation Sequencing (NGS) technology. The length of whole mitogenome is 16,358 bp and contains the typical gene arrangement, base composition, and codon usage found in other related species. The overall base composition of the mitochondrial genome is 37.0 % A, 32.2 % T, 20.2 % C, and 10.6 % G. All 13 protein-coding genes (PCGs) began with typical ATN initiation codon. Nine of the 13 PCGs have a complete termination codon, but the remaining four genes (COI, COIII, ND5, and ND4) terminate with an incomplete T. Phylogenetic analyses are carried out based on the concatenated dataset of 13 PCGs and two rRNAs of Tettigoniidae species available in GenBank. Both Bayesian inference and Maximum Likelihood analyses recovered each subfamily as a monophyletic group. Regardless of the position of Lipotactinae, the relationships among the subfamilies of Tettigoniidae were as follows: ((((Tettigoniinae, Bradyporinae) Meconematinae) Conocephalinae) Hexacentrinae). The topological structure of the phylogeny trees showed that the Xizicus (Haploxizicus) maculatus is closer to Xizicus (Xizicus) fascipes than Xizicus (Eoxizicus) howardi. https://zookeys.pensoft.net/articles.php?id=24156
collection DOAJ
language English
format Article
sources DOAJ
author Mao Shaoli
Yuan Hao
Lu Chao
Zhou Yafu
Shi Fuming
Wang Yuchao
spellingShingle Mao Shaoli
Yuan Hao
Lu Chao
Zhou Yafu
Shi Fuming
Wang Yuchao
The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by Next-Generation Sequencing and phylogenetic implication (Orthoptera, Meconematinae)
ZooKeys
author_facet Mao Shaoli
Yuan Hao
Lu Chao
Zhou Yafu
Shi Fuming
Wang Yuchao
author_sort Mao Shaoli
title The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by Next-Generation Sequencing and phylogenetic implication (Orthoptera, Meconematinae)
title_short The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by Next-Generation Sequencing and phylogenetic implication (Orthoptera, Meconematinae)
title_full The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by Next-Generation Sequencing and phylogenetic implication (Orthoptera, Meconematinae)
title_fullStr The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by Next-Generation Sequencing and phylogenetic implication (Orthoptera, Meconematinae)
title_full_unstemmed The complete mitochondrial genome of Xizicus (Haploxizicus) maculatus revealed by Next-Generation Sequencing and phylogenetic implication (Orthoptera, Meconematinae)
title_sort complete mitochondrial genome of xizicus (haploxizicus) maculatus revealed by next-generation sequencing and phylogenetic implication (orthoptera, meconematinae)
publisher Pensoft Publishers
series ZooKeys
issn 1313-2989
1313-2970
publishDate 2018-07-01
description Xizicus Gorochov, 1993, the quiet-calling katydid, is a diverse genus with 68 species in world, which includes more than 45 species in China, has undergone numerous taxonomic revisions with contradicting conclusions. In this study the complete mitochondrial genome of Xizicus (Haploxizicus) maculatus collected from Hainan for the first time was sequenced using the Next-Generation Sequencing (NGS) technology. The length of whole mitogenome is 16,358 bp and contains the typical gene arrangement, base composition, and codon usage found in other related species. The overall base composition of the mitochondrial genome is 37.0 % A, 32.2 % T, 20.2 % C, and 10.6 % G. All 13 protein-coding genes (PCGs) began with typical ATN initiation codon. Nine of the 13 PCGs have a complete termination codon, but the remaining four genes (COI, COIII, ND5, and ND4) terminate with an incomplete T. Phylogenetic analyses are carried out based on the concatenated dataset of 13 PCGs and two rRNAs of Tettigoniidae species available in GenBank. Both Bayesian inference and Maximum Likelihood analyses recovered each subfamily as a monophyletic group. Regardless of the position of Lipotactinae, the relationships among the subfamilies of Tettigoniidae were as follows: ((((Tettigoniinae, Bradyporinae) Meconematinae) Conocephalinae) Hexacentrinae). The topological structure of the phylogeny trees showed that the Xizicus (Haploxizicus) maculatus is closer to Xizicus (Xizicus) fascipes than Xizicus (Eoxizicus) howardi.
url https://zookeys.pensoft.net/articles.php?id=24156
work_keys_str_mv AT maoshaoli thecompletemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT yuanhao thecompletemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT luchao thecompletemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT zhouyafu thecompletemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT shifuming thecompletemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT wangyuchao thecompletemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT maoshaoli completemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT yuanhao completemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT luchao completemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT zhouyafu completemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT shifuming completemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
AT wangyuchao completemitochondrialgenomeofxizicushaploxizicusmaculatusrevealedbynextgenerationsequencingandphylogeneticimplicationorthopterameconematinae
_version_ 1725951096493441024