Functional characterization of protein domains common to animal viruses and mouse

• Main Authors: Kinjo Akira R, Kumagai Yutaro, Dinh Huy, Takeuchi Osamu, Standley Daron M
• Format: Article
• Language: English
• Published: BMC 2011-11-01
• Series: BMC Genomics

<p>Abstract</p> <p>Background</p> <p>Many viruses contain genes that originate from their hosts. Some of these acquired genes give viruses the ability to interfere with host immune responses by various mechanisms. Genes of host origin that appear commonly in viruses code for proteins that span a wide range of functions, from kinases and phosphotases, to cytokines and their receptors, to ubiquitin ligases and proteases. While many important cases of such lateral gene transfer in viruses have been documented, there has yet to be a genome-wide survey of viral-encoded genes acquired from animal hosts.</p> <p>Results</p> <p>Here we carry out such a survey in order to gain insight into the host immune system. We made the results available in the form of a web-based tool that allows viral-centered or host-centered queries to be performed (<url>http://imm.ifrec.osaka-u.ac.jp/musvirus/</url>). We examine the relationship between acquired genes and immune function, and compare host-virus homology with gene expression data in stimulated dendritic cells and T-cells. We found that genes whose expression changes significantly during the innate antiviral immune response had more homologs in animal virus than genes whose expression did not change or genes involved in the adaptive immune response.</p> <p>Conclusions</p> <p>Statistics gathered from the MusVirus database support earlier reports of gene transfer from host to virus and indicate that viruses are more likely to acquire genes involved in innate antiviral immune responses than those involved in acquired immune responses.</p>