smartPARE: An R Package for Efficient Identification of True mRNA Cleavage Sites

smartPARE: An R Package for Efficient Identification of True mRNA Cleavage Sites

Degradome sequencing is commonly used to generate high-throughput information on mRNA cleavage sites mediated by small RNAs (sRNA). In our datasets of potato (<i>Solanum tuberosum</i>, St) and <i>Phytophthora infestans</i> (Pi), initial predictions generated high numbers of c...

Full description

Bibliographic Details
Main Authors:	Kristian Persson Hodén, Xinyi Hu, German Martinez, Christina Dixelius
Format:	Article
Language:	English
Published:	MDPI AG 2021-04-01
Series:	International Journal of Molecular Sciences
Subjects:	cleavage sites <i>Phytophthora infestans</i> potato small RNA <i>Solanum tuberosum</i>
Online Access:	https://www.mdpi.com/1422-0067/22/8/4267

Similar Items

Sistemas de previsão de requeima em cultivos de batata em Santa Maria, RS Forecast systems of late blight in potato crops in Santa Maria, Rio Grande do Sul State, Brazil
by: Leosane Cristina Bosco, et al.
Published: (2010-01-01)

Efeito do silicato de potássio isoladamente ou em mistura com fungicida no controle da requeima da batateira Effect of potassium silicate alone or mixed with fungicides on the control of late blight on potato
by: Henrique da Silva Silveira Duarte, et al.
Published: (2008-02-01)

Sistema de previsão de ocorrência de requeima em clones de batata suscetíveis e resistentes Forecasting system of late blight occurrence in susceptible and resistant potato clones
by: Leosane Cristina Bosco, et al.
Published: (2009-07-01)

Green Leaf Volatile Confers Management of Late Blight Disease: A Green Vaccination in Potato
by: Neda Najdabbasi, et al.
Published: (2021-04-01)

Stacking Resistance Genes in Multiparental Interspecific Potato Hybrids to Anticipate Late Blight Outbreaks
by: Elena V. Rogozina, et al.
Published: (2021-01-01)

Genetic aspects of potato resistance to phytophthorosis
by: T. S. Frolova, et al.
Published: (2021-04-01)

The early days of late blight
by: Paul RJ Birch, et al.
Published: (2013-06-01)

The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
by: Kentaro Yoshida, et al.
Published: (2013-05-01)

EVALUACIÓN DEL BIOINSUMO DE FIQUE (Furcraea gigantea) EN EL CONTROL DEL TIZÓN TARDÍO DE LA PAPA
by: DAVID EDUARDO ÁLVAREZ S, et al.
Published: (2013-12-01)

Evaluación preliminar del efecto que sobre algunas enzimas del suelo tienen diferentes mecanismos de control del hongo (Phytophthora infestans) en un cultivo de papa (Solanum tuberosum) bajo dos tipos de manejo agrícola (orgánico y convencional)
by: Pedro Nel Murcia García, et al.
Published: (2004-07-01)

Ethylicin Prevents Potato Late Blight by Disrupting Protein Biosynthesis of <i>Phytophthora infestans</i>
by: Shumin Zhang, et al.
Published: (2020-04-01)

Structural Variations in the Genome of Potato Varieties of the Ural Selection
by: Georgiy A. Lihodeevskiy, et al.
Published: (2021-08-01)

Sonochemical Synthesis of 2’-Hydroxy-Chalcone Derivatives with Potential Anti-Oomycete Activity
by: Génesis López, et al.
Published: (2020-09-01)

Analyse et modélisation des effets des pratiques culturales sur les épidémies de mildiou de la pomme de terre. Adaptation du modèle SIPPOM (Simulator for Integrated Pathogen POpulation Management) au pathosystème
by: Rakotonindraina, Toky Fanambinana
Published: (2012)

CARACTERIZACIÓN GENÉTICA DE AISLAMIENTOS DE PHYTOPHTHORA INFESTANS EN LAS ZONAS PRODUCTORAS DE PAPA DE LOS DEPARTAMENTOS DE ANTIOQUIA, BOYACÁ, CUNDINAMARCA Y NORTE DE SANTANDER (COLOMBIA) GENETIC CHARACTERIZATION OF PHYTOPHTHORA INFESTANS ISOLATES IN THE POTATO-GROWING REGIONS OF ANTIOQUIA, BOYACA, CUNDINAMARCA AND NORTE DE SANTANDER (COLOMBIA)
by: Bernardo Silva, et al.
Published: (2009-06-01)

Poultry litter and fresh mulch of Elephant grass improve the organic potato production
by: Renato Yagi, et al.
Published: (2019-11-01)

Ação protetora, residual, curativa e anti-esporulante de fungicidas no controle da requeima e da pinta preta da batata em condições controladas
by: J.G. Töfoli, et al.

Novel characteristics of Phytophthora infestans causing late blight on potato in Ethiopia
by: Daniel Shimelash, et al.
Published: (2020-12-01)

Ametoctradin: a new fungicide for potato late blight control
by: Jesus Guerino Töfoli, et al.
Published: (2016-11-01)

Tomato Landraces Are Competitive with Commercial Varieties in Terms of Tolerance to Plant Pathogens—A Case Study of Hungarian Gene Bank Accessions on Organic Farms
by: Krisztina Boziné-Pullai, et al.
Published: (2021-04-01)

Resistência de cultivares de batata à requeima
by: Duarte, Henrique da Silva Silveira
Published: (2015)

The Leaf Wettability of Various Potato Cultivars
by: Ewa Papierowska, et al.
Published: (2020-04-01)

Detection of Novel QTLs for Late Blight Resistance Derived from the Wild Potato Species <i>Solanum microdontum </i>and <i>Solanum pampasense</i>
by: Fergus Meade, et al.
Published: (2020-06-01)

Comparative transcript profiling by SuperSAGE identifies novel candidate genes for controlling potato quantitative resistance to late blight not compromised by late maturity.
by: Astrid M. Draffehn, et al.
Published: (2013-11-01)

Endophytic Strain <i>Bacillus subtilis</i> 26DCryChS Producing Cry1Ia Toxin from <i>Bacillus thuringiensis</i> Promotes Multifaceted Potato Defense against <i>Phytophthora infestans</i> (Mont.) de Bary and Pest <i>Leptinotarsa decemlineata</i> Say
by: Antonina Sorokan, et al.
Published: (2020-08-01)

Allelic Variation and Selection in Effector Genes of <i>Phytophthora infestans</i> (Mont.) de Bary
by: Juan G. Morales, et al.
Published: (2020-07-01)

A simple method for diagnostic of Phytophthora infestans (Mont.) de Bary from potato agricultural fields of potato
by: Touseef Hussain, et al.
Published: (2015-11-01)

Measuring late blight attack of potato foliage in field trials: optimal resource allocation in assessment trials
by: Bernd Truberg, et al.
Published: (2010-04-01)

Empirischer Vergleich verschiedener Methoden zur Reifekorrektur von Daten zum Befall mit Krautfäule (<em>Phytophthora infestans</em> (Mont.) de Bary) in Selektionsexperimenten bei der Kartoffel (<em>Solanum tuberosum</em> subsp. <em>tuberosum</em>)
by: Bernd Truberg, et al.
Published: (2009-03-01)

Effect of simulated rain on the efficiency of fungicides in potato late blight and early blight control
by: Jesus Guerino Tofoli, et al.
Published: (2014-12-01)

Controle da requeima e pinta preta da batata por fungicidas e seu reflexo sobre a produtividade e a qualidade de tubérculos
by: Jesus Guerino Töfoli, et al.
Published: (2016-04-01)

Impact of Different Shading Levels on Growth, Yield and Quality of Potato (<i>Solanum tuberosum</i> L.)
by: Vanessa S. Schulz, et al.
Published: (2019-06-01)

Use of a Specific Phage Cocktail for Soft Rot Control on Ware Potatoes: A Case Study
by: Eugenia N. Bugaeva, et al.
Published: (2021-06-01)

Effects of Endophytic <i>Bacillus Subtilis</i> and Salicylic Acid on Postharvest Diseases (<i>Phytophthora infestans, Fusarium oxysporum</i>) Development in Stored Potato Tubers
by: Oksana Lastochkina, et al.
Published: (2020-01-01)

Inhibitory Properties of Aldehydes and Related Compounds against <i>Phytophthora infestans</i>—Identification of a New Lead
by: John J. Mackrill, et al.
Published: (2020-07-01)

<i>CLAVATA3</i><i>/</i><i>EMBRYO</i> <i>SURROUNDING</i> <i>REGION</i> (<i>CLE</i>) Gene Family in Potato (<i>Solanum</i> <i>tuberosum</i> L.): Identification and Expression Analysis
by: Maria Gancheva, et al.
Published: (2021-05-01)

Evaluation of the ‘Irish Rules’: The Potato Late Blight Forecasting Model and Its Operational Use in the Republic of Ireland
by: Mladen Cucak, et al.
Published: (2019-09-01)

South American species <i>Solanum alandiae</i> Card. and <i>S. okadae</i> Hawkes et Hjerting as potential sources of genes for potato late blight resistance
by: O. A. Muratova (Fadina), et al.
Published: (2020-04-01)

Pre-breeding bei der Kartoffel (<em>Solanum tuberosum</em>) zur Verbesserung der Resistenz gegen <em>Phytophthora infestans</em>
by: Johanna Blossei, et al.
Published: (2020-12-01)

Peptide-Based Identification of <i>Phytophthora</i> Isolates and <i>Phytophthora</i> Detection in Planta
by: Miroslav Berka, et al.
Published: (2020-12-01)