Fast and automatic estimation of transition state structures using tight binding quantum chemical calculations

We present a method for the automatic determination of transition states (TSs) that is based on Grimme’s RMSD-PP semiempirical tight binding reaction path method (J. Chem. Theory Comput. 2019, 15, 2847–2862), where the maximum energy structure along the path serves as an initial guess for DFT TS sea...

Full description

Bibliographic Details
Main Authors: Maria H. Rasmussen, Jan H. Jensen
Format: Article
Language:English
Published: PeerJ Inc. 2020-09-01
Series:PeerJ Physical Chemistry
Subjects:
Online Access:https://peerj.com/articles/pchem-15.pdf
id doaj-4c5bab8ab33d4fdeab33a70691b94618
record_format Article
spelling doaj-4c5bab8ab33d4fdeab33a70691b946182020-11-25T03:39:22ZengPeerJ Inc.PeerJ Physical Chemistry2689-77332020-09-012e1510.7717/peerj-pchem.15Fast and automatic estimation of transition state structures using tight binding quantum chemical calculationsMaria H. Rasmussen0Jan H. Jensen1Department of Chemistry, University of Copenhagen, Copenhagen, DenmarkDepartment of Chemistry, University of Copenhagen, Copenhagen, DenmarkWe present a method for the automatic determination of transition states (TSs) that is based on Grimme’s RMSD-PP semiempirical tight binding reaction path method (J. Chem. Theory Comput. 2019, 15, 2847–2862), where the maximum energy structure along the path serves as an initial guess for DFT TS searches. The method is tested on 100 elementary reactions and located a total of 89 TSs correctly. Of the 11 remaining reactions, nine are shown not to be elementary reactions after all and for one of the two true failures the problem is shown to be the semiempirical tight binding model itself. Furthermore, we show that the GFN2-xTB RMSD-PP barrier is a good approximation for the corresponding DFT barrier for reactions with DFT barrier heights up to about 30 kcal/mol. Thus, GFN2-xTB RMSD-PP barrier heights, which can be estimated at the cost of a single energy minimisation, can be used to quickly identify reactions with low barriers, although it will also produce some false positives.https://peerj.com/articles/pchem-15.pdfTransition states
collection DOAJ
language English
format Article
sources DOAJ
author Maria H. Rasmussen
Jan H. Jensen
spellingShingle Maria H. Rasmussen
Jan H. Jensen
Fast and automatic estimation of transition state structures using tight binding quantum chemical calculations
PeerJ Physical Chemistry
Transition states
author_facet Maria H. Rasmussen
Jan H. Jensen
author_sort Maria H. Rasmussen
title Fast and automatic estimation of transition state structures using tight binding quantum chemical calculations
title_short Fast and automatic estimation of transition state structures using tight binding quantum chemical calculations
title_full Fast and automatic estimation of transition state structures using tight binding quantum chemical calculations
title_fullStr Fast and automatic estimation of transition state structures using tight binding quantum chemical calculations
title_full_unstemmed Fast and automatic estimation of transition state structures using tight binding quantum chemical calculations
title_sort fast and automatic estimation of transition state structures using tight binding quantum chemical calculations
publisher PeerJ Inc.
series PeerJ Physical Chemistry
issn 2689-7733
publishDate 2020-09-01
description We present a method for the automatic determination of transition states (TSs) that is based on Grimme’s RMSD-PP semiempirical tight binding reaction path method (J. Chem. Theory Comput. 2019, 15, 2847–2862), where the maximum energy structure along the path serves as an initial guess for DFT TS searches. The method is tested on 100 elementary reactions and located a total of 89 TSs correctly. Of the 11 remaining reactions, nine are shown not to be elementary reactions after all and for one of the two true failures the problem is shown to be the semiempirical tight binding model itself. Furthermore, we show that the GFN2-xTB RMSD-PP barrier is a good approximation for the corresponding DFT barrier for reactions with DFT barrier heights up to about 30 kcal/mol. Thus, GFN2-xTB RMSD-PP barrier heights, which can be estimated at the cost of a single energy minimisation, can be used to quickly identify reactions with low barriers, although it will also produce some false positives.
topic Transition states
url https://peerj.com/articles/pchem-15.pdf
work_keys_str_mv AT mariahrasmussen fastandautomaticestimationoftransitionstatestructuresusingtightbindingquantumchemicalcalculations
AT janhjensen fastandautomaticestimationoftransitionstatestructuresusingtightbindingquantumchemicalcalculations
_version_ 1724539287767089152