Water Organization and Dynamics on Mineral Surfaces Interrogated by Graph Theoretical Analyses of Intermolecular Chemical Networks

Intermolecular chemical networks defined by the hydrogen bonds formed at the α-quartz|water interface have been data-mined using graph theoretical methods so as to identify and quantify structural patterns and dynamic behavior. Using molecular-dynamics simulations data, the hydrogen bond (H-bond) di...

Full description

Bibliographic Details
Main Authors: Abdullah Ozkanlar, Morgan P. Kelley, Aurora E. Clark
Format: Article
Language:English
Published: MDPI AG 2014-03-01
Series:Minerals
Subjects:
Online Access:http://www.mdpi.com/2075-163X/4/1/118
id doaj-4a8a9da810ae464ca2d72afafda82f3e
record_format Article
spelling doaj-4a8a9da810ae464ca2d72afafda82f3e2020-11-24T22:16:04ZengMDPI AGMinerals2075-163X2014-03-014111812910.3390/min4010118min4010118Water Organization and Dynamics on Mineral Surfaces Interrogated by Graph Theoretical Analyses of Intermolecular Chemical NetworksAbdullah Ozkanlar0Morgan P. Kelley1Aurora E. Clark2Department of Chemistry, Washington State University, Pullman, WA 99164, USADepartment of Chemistry, Washington State University, Pullman, WA 99164, USADepartment of Chemistry, Washington State University, Pullman, WA 99164, USAIntermolecular chemical networks defined by the hydrogen bonds formed at the α-quartz|water interface have been data-mined using graph theoretical methods so as to identify and quantify structural patterns and dynamic behavior. Using molecular-dynamics simulations data, the hydrogen bond (H-bond) distributions for the water-water and water-silanol H-bond networks have been determined followed by the calculation of the persistence of the H-bond, the dipole-angle oscillations that water makes with the surface silanol groups over time, and the contiguous H-bonded chains formed at the interface. Changes in these properties have been monitored as a function of surface coverage. Using the H-bond distribution between water and the surface silanol groups, the actual number of waters adsorbed to the surface is found to be 0.6 H2O/10 Å2, irrespective of the total concentration of waters within the system. The unbroken H-bond network of interfacial waters extends farther than in the bulk liquid; however, it is more fluxional at low surface coverages (i.e., the H-bond persistence in a monolayer of water is shorter than in the bulk) Concentrations of H2O at previously determined water adsorption sites have also been quantified. This work demonstrates the complementary information that can be obtained through graph theoretical analysis of the intermolecular H-bond networks relative to standard analyses of molecular simulation data.http://www.mdpi.com/2075-163X/4/1/118mineral surfacesα-quartz|water interfacechemical networkshydrogen bondgraph theorycomplex network analysis
collection DOAJ
language English
format Article
sources DOAJ
author Abdullah Ozkanlar
Morgan P. Kelley
Aurora E. Clark
spellingShingle Abdullah Ozkanlar
Morgan P. Kelley
Aurora E. Clark
Water Organization and Dynamics on Mineral Surfaces Interrogated by Graph Theoretical Analyses of Intermolecular Chemical Networks
Minerals
mineral surfaces
α-quartz|water interface
chemical networks
hydrogen bond
graph theory
complex network analysis
author_facet Abdullah Ozkanlar
Morgan P. Kelley
Aurora E. Clark
author_sort Abdullah Ozkanlar
title Water Organization and Dynamics on Mineral Surfaces Interrogated by Graph Theoretical Analyses of Intermolecular Chemical Networks
title_short Water Organization and Dynamics on Mineral Surfaces Interrogated by Graph Theoretical Analyses of Intermolecular Chemical Networks
title_full Water Organization and Dynamics on Mineral Surfaces Interrogated by Graph Theoretical Analyses of Intermolecular Chemical Networks
title_fullStr Water Organization and Dynamics on Mineral Surfaces Interrogated by Graph Theoretical Analyses of Intermolecular Chemical Networks
title_full_unstemmed Water Organization and Dynamics on Mineral Surfaces Interrogated by Graph Theoretical Analyses of Intermolecular Chemical Networks
title_sort water organization and dynamics on mineral surfaces interrogated by graph theoretical analyses of intermolecular chemical networks
publisher MDPI AG
series Minerals
issn 2075-163X
publishDate 2014-03-01
description Intermolecular chemical networks defined by the hydrogen bonds formed at the α-quartz|water interface have been data-mined using graph theoretical methods so as to identify and quantify structural patterns and dynamic behavior. Using molecular-dynamics simulations data, the hydrogen bond (H-bond) distributions for the water-water and water-silanol H-bond networks have been determined followed by the calculation of the persistence of the H-bond, the dipole-angle oscillations that water makes with the surface silanol groups over time, and the contiguous H-bonded chains formed at the interface. Changes in these properties have been monitored as a function of surface coverage. Using the H-bond distribution between water and the surface silanol groups, the actual number of waters adsorbed to the surface is found to be 0.6 H2O/10 Å2, irrespective of the total concentration of waters within the system. The unbroken H-bond network of interfacial waters extends farther than in the bulk liquid; however, it is more fluxional at low surface coverages (i.e., the H-bond persistence in a monolayer of water is shorter than in the bulk) Concentrations of H2O at previously determined water adsorption sites have also been quantified. This work demonstrates the complementary information that can be obtained through graph theoretical analysis of the intermolecular H-bond networks relative to standard analyses of molecular simulation data.
topic mineral surfaces
α-quartz|water interface
chemical networks
hydrogen bond
graph theory
complex network analysis
url http://www.mdpi.com/2075-163X/4/1/118
work_keys_str_mv AT abdullahozkanlar waterorganizationanddynamicsonmineralsurfacesinterrogatedbygraphtheoreticalanalysesofintermolecularchemicalnetworks
AT morganpkelley waterorganizationanddynamicsonmineralsurfacesinterrogatedbygraphtheoreticalanalysesofintermolecularchemicalnetworks
AT auroraeclark waterorganizationanddynamicsonmineralsurfacesinterrogatedbygraphtheoreticalanalysesofintermolecularchemicalnetworks
_version_ 1725791453317169152