Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective.

BACKGROUND & AIMS:Current non-invasive scores for the assessment of severity of non-alcoholic fatty liver disease (NAFLD) and identification of patients with non-alcoholic steatohepatitis (NASH) have insufficient performance to be included in clinical routine. In the current study, we developed...

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Main Authors: Ali Canbay, Julia Kälsch, Ursula Neumann, Monika Rau, Simon Hohenester, Hideo A Baba, Christian Rust, Andreas Geier, Dominik Heider, Jan-Peter Sowa
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2019-01-01
Series:PLoS ONE
Online Access:https://doi.org/10.1371/journal.pone.0214436
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spelling doaj-49e3a3f4ce94411c8eef5076c65c37712021-03-03T20:47:18ZengPublic Library of Science (PLoS)PLoS ONE1932-62032019-01-01143e021443610.1371/journal.pone.0214436Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective.Ali CanbayJulia KälschUrsula NeumannMonika RauSimon HohenesterHideo A BabaChristian RustAndreas GeierDominik HeiderJan-Peter SowaBACKGROUND & AIMS:Current non-invasive scores for the assessment of severity of non-alcoholic fatty liver disease (NAFLD) and identification of patients with non-alcoholic steatohepatitis (NASH) have insufficient performance to be included in clinical routine. In the current study, we developed a novel machine learning approach to overcome the caveats of existing approaches. METHODS:Non-invasive parameters were selected by an ensemble feature selection (EFS) from a retrospectively collected training cohort of 164 obese individuals (age: 43.5±10.3y; BMI: 54.1±10.1kg/m2) to develop a model able to predict the histological assessed NAFLD activity score (NAS). The model was evaluated in an independent validation cohort (122 patients, age: 45.2±11.75y, BMI: 50.8±8.61kg/m2). RESULTS:EFS identified age, γGT, HbA1c, adiponectin, and M30 as being highly associated with NAFLD. The model reached a Spearman correlation coefficient with the NAS of 0.46 in the training cohort and was able to differentiate between NAFL (NAS≤4) and NASH (NAS>4) with an AUC of 0.73. In the independent validation cohort, an AUC of 0.7 was achieved for this separation. We further analyzed the potential of the new model for disease monitoring in an obese cohort of 38 patients under lifestyle intervention for one year. While all patients lost weight under intervention, increasing scores were observed in 15 patients. Increasing scores were associated with significantly lower absolute weight loss, lower reduction of waist circumference and basal metabolic rate. CONCLUSIONS:A newly developed model (http://CHek.heiderlab.de) can predict presence or absence of NASH with reasonable performance. The new score could be used to detect NASH and monitor disease progression or therapy response to weight loss interventions.https://doi.org/10.1371/journal.pone.0214436
collection DOAJ
language English
format Article
sources DOAJ
author Ali Canbay
Julia Kälsch
Ursula Neumann
Monika Rau
Simon Hohenester
Hideo A Baba
Christian Rust
Andreas Geier
Dominik Heider
Jan-Peter Sowa
spellingShingle Ali Canbay
Julia Kälsch
Ursula Neumann
Monika Rau
Simon Hohenester
Hideo A Baba
Christian Rust
Andreas Geier
Dominik Heider
Jan-Peter Sowa
Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective.
PLoS ONE
author_facet Ali Canbay
Julia Kälsch
Ursula Neumann
Monika Rau
Simon Hohenester
Hideo A Baba
Christian Rust
Andreas Geier
Dominik Heider
Jan-Peter Sowa
author_sort Ali Canbay
title Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective.
title_short Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective.
title_full Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective.
title_fullStr Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective.
title_full_unstemmed Non-invasive assessment of NAFLD as systemic disease-A machine learning perspective.
title_sort non-invasive assessment of nafld as systemic disease-a machine learning perspective.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2019-01-01
description BACKGROUND & AIMS:Current non-invasive scores for the assessment of severity of non-alcoholic fatty liver disease (NAFLD) and identification of patients with non-alcoholic steatohepatitis (NASH) have insufficient performance to be included in clinical routine. In the current study, we developed a novel machine learning approach to overcome the caveats of existing approaches. METHODS:Non-invasive parameters were selected by an ensemble feature selection (EFS) from a retrospectively collected training cohort of 164 obese individuals (age: 43.5±10.3y; BMI: 54.1±10.1kg/m2) to develop a model able to predict the histological assessed NAFLD activity score (NAS). The model was evaluated in an independent validation cohort (122 patients, age: 45.2±11.75y, BMI: 50.8±8.61kg/m2). RESULTS:EFS identified age, γGT, HbA1c, adiponectin, and M30 as being highly associated with NAFLD. The model reached a Spearman correlation coefficient with the NAS of 0.46 in the training cohort and was able to differentiate between NAFL (NAS≤4) and NASH (NAS>4) with an AUC of 0.73. In the independent validation cohort, an AUC of 0.7 was achieved for this separation. We further analyzed the potential of the new model for disease monitoring in an obese cohort of 38 patients under lifestyle intervention for one year. While all patients lost weight under intervention, increasing scores were observed in 15 patients. Increasing scores were associated with significantly lower absolute weight loss, lower reduction of waist circumference and basal metabolic rate. CONCLUSIONS:A newly developed model (http://CHek.heiderlab.de) can predict presence or absence of NASH with reasonable performance. The new score could be used to detect NASH and monitor disease progression or therapy response to weight loss interventions.
url https://doi.org/10.1371/journal.pone.0214436
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