RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes

Polycomb group (PcG) proteins function as chromatin-based transcriptional repressors that are essential for normal gene regulation during development. However, how these systems function to achieve transcriptional regulation remains very poorly understood. Here, we discover that the histone H2AK119...

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Main Authors: Nathan R Rose, Hamish W King, Neil P Blackledge, Nadezda A Fursova, Katherine JI Ember, Roman Fischer, Benedikt M Kessler, Robert J Klose
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2016-10-01
Series:eLife
Subjects:
Online Access:https://elifesciences.org/articles/18591
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spelling doaj-479b684d7ad6400eb4b7ba915ba20c6e2021-05-05T00:37:30ZengeLife Sciences Publications LtdeLife2050-084X2016-10-01510.7554/eLife.18591RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexesNathan R Rose0Hamish W King1Neil P Blackledge2Nadezda A Fursova3Katherine JI Ember4Roman Fischer5https://orcid.org/0000-0002-9715-5951Benedikt M Kessler6Robert J Klose7https://orcid.org/0000-0002-8726-7888Department of Biochemistry, University of Oxford, Oxford, United KingdomDepartment of Biochemistry, University of Oxford, Oxford, United KingdomDepartment of Biochemistry, University of Oxford, Oxford, United KingdomDepartment of Biochemistry, University of Oxford, Oxford, United KingdomDepartment of Biochemistry, University of Oxford, Oxford, United KingdomTDI Mass Spectrometry Laboratory, Target Discovery Institute, University of Oxford, Oxford, United KingdomTDI Mass Spectrometry Laboratory, Target Discovery Institute, University of Oxford, Oxford, United Kingdom; Nuffield Department of Medicine, University of Oxford, Oxford, United KingdomDepartment of Biochemistry, University of Oxford, Oxford, United Kingdom; Nuffield Department of Medicine, University of Oxford, Oxford, United KingdomPolycomb group (PcG) proteins function as chromatin-based transcriptional repressors that are essential for normal gene regulation during development. However, how these systems function to achieve transcriptional regulation remains very poorly understood. Here, we discover that the histone H2AK119 E3 ubiquitin ligase activity of Polycomb repressive complex 1 (PRC1) is defined by the composition of its catalytic subunits and is highly regulated by RYBP/YAF2-dependent stimulation. In mouse embryonic stem cells, RYBP plays a central role in shaping H2AK119 mono-ubiquitylation at PcG targets and underpins an activity-based communication between PRC1 and Polycomb repressive complex 2 (PRC2) which is required for normal histone H3 lysine 27 trimethylation (H3K27me3). Without normal histone modification-dependent communication between PRC1 and PRC2, repressive Polycomb chromatin domains can erode, rendering target genes susceptible to inappropriate gene expression signals. This suggests that activity-based communication and histone modification-dependent thresholds create a localized form of epigenetic memory required for normal PcG chromatin domain function in gene regulation.https://elifesciences.org/articles/18591chromatingene expressionhistone modificationPolycomb repressive complexE3 ubiquitin ligase
collection DOAJ
language English
format Article
sources DOAJ
author Nathan R Rose
Hamish W King
Neil P Blackledge
Nadezda A Fursova
Katherine JI Ember
Roman Fischer
Benedikt M Kessler
Robert J Klose
spellingShingle Nathan R Rose
Hamish W King
Neil P Blackledge
Nadezda A Fursova
Katherine JI Ember
Roman Fischer
Benedikt M Kessler
Robert J Klose
RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes
eLife
chromatin
gene expression
histone modification
Polycomb repressive complex
E3 ubiquitin ligase
author_facet Nathan R Rose
Hamish W King
Neil P Blackledge
Nadezda A Fursova
Katherine JI Ember
Roman Fischer
Benedikt M Kessler
Robert J Klose
author_sort Nathan R Rose
title RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes
title_short RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes
title_full RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes
title_fullStr RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes
title_full_unstemmed RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes
title_sort rybp stimulates prc1 to shape chromatin-based communication between polycomb repressive complexes
publisher eLife Sciences Publications Ltd
series eLife
issn 2050-084X
publishDate 2016-10-01
description Polycomb group (PcG) proteins function as chromatin-based transcriptional repressors that are essential for normal gene regulation during development. However, how these systems function to achieve transcriptional regulation remains very poorly understood. Here, we discover that the histone H2AK119 E3 ubiquitin ligase activity of Polycomb repressive complex 1 (PRC1) is defined by the composition of its catalytic subunits and is highly regulated by RYBP/YAF2-dependent stimulation. In mouse embryonic stem cells, RYBP plays a central role in shaping H2AK119 mono-ubiquitylation at PcG targets and underpins an activity-based communication between PRC1 and Polycomb repressive complex 2 (PRC2) which is required for normal histone H3 lysine 27 trimethylation (H3K27me3). Without normal histone modification-dependent communication between PRC1 and PRC2, repressive Polycomb chromatin domains can erode, rendering target genes susceptible to inappropriate gene expression signals. This suggests that activity-based communication and histone modification-dependent thresholds create a localized form of epigenetic memory required for normal PcG chromatin domain function in gene regulation.
topic chromatin
gene expression
histone modification
Polycomb repressive complex
E3 ubiquitin ligase
url https://elifesciences.org/articles/18591
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