Identification of an alternative splicing signature as an independent factor in colon cancer

• Main Authors: Haitao Chen, Jun Luo, Jianchun Guo
• Format: Article
• Language: English
• Published: BMC 2020-09-01
• Series: BMC Cancer
• Subjects: Alternative splicing; Signature; Prognosis; Colon cancer
• Online Access: http://link.springer.com/article/10.1186/s12885-020-07419-7

Abstract Background Colon cancer is a common malignant tumor with a poor prognosis. Abnormal alternative splicing (AS) events played a part in the occurrence and metastasis of the tumor. We aimed to develop a survival-associated AS signature in colon cancer. Methods The Percent Spliced In values of AS events were available in The Cancer Genome Atlas (TCGA) SpliceSeq database. Univariate Cox analysis was carried out to detect the prognosis-related AS events. We created a predictive model on account of the survival-associated AS events, which was further validated with a training-testing group design. Kaplan-Meier analysis was applied to assess patient survival. The area under curve (AUC) of receiver operating characteristic (ROC) was performed to evaluate the predictive values of this model. Meanwhile, the clinical relevance of the signature and its regulatory relationship with splicing factors (SFs) were also evaluated. Results In total, 2132 survival-related AS events were identified from colon cancer samples. We developed an eleven-AS signature, in which the 5-year AUC value was 0.911. Meanwhile, the AUC values at five years were 0.782 and 0.855 in the testing and entire cohort, respectively. Multivariate Cox regression displayed that the T category and the risk score of the signature were independent risk factors of colon cancer survival. Also, we constructed an SFs-AS network based on 11 SFs and 48 AS events. Conclusions We identified an eleven-AS signature of colon cancer. This signature could be treated as an independent prognostic factor.