Durable CRISPR-Based Epigenetic Silencing
Development of CRISPR-based epigenome editing tools is important for the study and engineering of biological behavior. Here, we describe the design of a reporter system for quantifying the ability of CRISPR epigenome editors to produce a stable gene repression. We characterize the dynamics of durabl...
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American Association for the Advancement of Science
2021-01-01
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Series: | BioDesign Research |
Online Access: | http://dx.doi.org/10.34133/2021/9815820 |
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doaj-44079b06c971414dad1d4ddf8b2b4f222021-07-12T02:06:03ZengAmerican Association for the Advancement of ScienceBioDesign Research2693-12572021-01-01202110.34133/2021/9815820Durable CRISPR-Based Epigenetic SilencingMuneaki Nakamura0Alexis E. Ivec1Alexis E. Ivec2Yuchen Gao3Yuchen Gao4Lei S. Qi5Lei S. Qi6Lei S. Qi7Department of Bioengineering,Stanford,CA 94305,USADepartment of Bioengineering,Stanford,CA 94305,USAProgram in Human Biology,Stanford,CA 94305,USADepartment of Bioengineering,Stanford,CA 94305,USACancer Biology Program,Stanford,CA 94305,USADepartment of Bioengineering,Stanford,CA 94305,USADepartment of Chemical and Systems Biology,Stanford,CA 94305,USAChEM-H Institute,Stanford,CA 94305,USADevelopment of CRISPR-based epigenome editing tools is important for the study and engineering of biological behavior. Here, we describe the design of a reporter system for quantifying the ability of CRISPR epigenome editors to produce a stable gene repression. We characterize the dynamics of durable gene silencing and reactivation, as well as the induced epigenetic changes of this system. We report the creation of single-protein CRISPR constructs bearing combinations of three epigenetic editing domains, termed KAL, that can stably repress the gene expression. This system should allow for the development of novel epigenome editing tools which will be useful in a wide array of biological research and engineering applications.http://dx.doi.org/10.34133/2021/9815820 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Muneaki Nakamura Alexis E. Ivec Alexis E. Ivec Yuchen Gao Yuchen Gao Lei S. Qi Lei S. Qi Lei S. Qi |
spellingShingle |
Muneaki Nakamura Alexis E. Ivec Alexis E. Ivec Yuchen Gao Yuchen Gao Lei S. Qi Lei S. Qi Lei S. Qi Durable CRISPR-Based Epigenetic Silencing BioDesign Research |
author_facet |
Muneaki Nakamura Alexis E. Ivec Alexis E. Ivec Yuchen Gao Yuchen Gao Lei S. Qi Lei S. Qi Lei S. Qi |
author_sort |
Muneaki Nakamura |
title |
Durable CRISPR-Based Epigenetic Silencing |
title_short |
Durable CRISPR-Based Epigenetic Silencing |
title_full |
Durable CRISPR-Based Epigenetic Silencing |
title_fullStr |
Durable CRISPR-Based Epigenetic Silencing |
title_full_unstemmed |
Durable CRISPR-Based Epigenetic Silencing |
title_sort |
durable crispr-based epigenetic silencing |
publisher |
American Association for the Advancement of Science |
series |
BioDesign Research |
issn |
2693-1257 |
publishDate |
2021-01-01 |
description |
Development of CRISPR-based epigenome editing tools is important for the study and engineering of biological behavior. Here, we describe the design of a reporter system for quantifying the ability of CRISPR epigenome editors to produce a stable gene repression. We characterize the dynamics of durable gene silencing and reactivation, as well as the induced epigenetic changes of this system. We report the creation of single-protein CRISPR constructs bearing combinations of three epigenetic editing domains, termed KAL, that can stably repress the gene expression. This system should allow for the development of novel epigenome editing tools which will be useful in a wide array of biological research and engineering applications. |
url |
http://dx.doi.org/10.34133/2021/9815820 |
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1714449560852496384 |