Durable CRISPR-Based Epigenetic Silencing

Development of CRISPR-based epigenome editing tools is important for the study and engineering of biological behavior. Here, we describe the design of a reporter system for quantifying the ability of CRISPR epigenome editors to produce a stable gene repression. We characterize the dynamics of durabl...

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Main Authors: Muneaki Nakamura, Alexis E. Ivec, Yuchen Gao, Lei S. Qi
Format: Article
Language:English
Published: American Association for the Advancement of Science 2021-01-01
Series:BioDesign Research
Online Access:http://dx.doi.org/10.34133/2021/9815820
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spelling doaj-44079b06c971414dad1d4ddf8b2b4f222021-07-12T02:06:03ZengAmerican Association for the Advancement of ScienceBioDesign Research2693-12572021-01-01202110.34133/2021/9815820Durable CRISPR-Based Epigenetic SilencingMuneaki Nakamura0Alexis E. Ivec1Alexis E. Ivec2Yuchen Gao3Yuchen Gao4Lei S. Qi5Lei S. Qi6Lei S. Qi7Department of Bioengineering,Stanford,CA 94305,USADepartment of Bioengineering,Stanford,CA 94305,USAProgram in Human Biology,Stanford,CA 94305,USADepartment of Bioengineering,Stanford,CA 94305,USACancer Biology Program,Stanford,CA 94305,USADepartment of Bioengineering,Stanford,CA 94305,USADepartment of Chemical and Systems Biology,Stanford,CA 94305,USAChEM-H Institute,Stanford,CA 94305,USADevelopment of CRISPR-based epigenome editing tools is important for the study and engineering of biological behavior. Here, we describe the design of a reporter system for quantifying the ability of CRISPR epigenome editors to produce a stable gene repression. We characterize the dynamics of durable gene silencing and reactivation, as well as the induced epigenetic changes of this system. We report the creation of single-protein CRISPR constructs bearing combinations of three epigenetic editing domains, termed KAL, that can stably repress the gene expression. This system should allow for the development of novel epigenome editing tools which will be useful in a wide array of biological research and engineering applications.http://dx.doi.org/10.34133/2021/9815820
collection DOAJ
language English
format Article
sources DOAJ
author Muneaki Nakamura
Alexis E. Ivec
Alexis E. Ivec
Yuchen Gao
Yuchen Gao
Lei S. Qi
Lei S. Qi
Lei S. Qi
spellingShingle Muneaki Nakamura
Alexis E. Ivec
Alexis E. Ivec
Yuchen Gao
Yuchen Gao
Lei S. Qi
Lei S. Qi
Lei S. Qi
Durable CRISPR-Based Epigenetic Silencing
BioDesign Research
author_facet Muneaki Nakamura
Alexis E. Ivec
Alexis E. Ivec
Yuchen Gao
Yuchen Gao
Lei S. Qi
Lei S. Qi
Lei S. Qi
author_sort Muneaki Nakamura
title Durable CRISPR-Based Epigenetic Silencing
title_short Durable CRISPR-Based Epigenetic Silencing
title_full Durable CRISPR-Based Epigenetic Silencing
title_fullStr Durable CRISPR-Based Epigenetic Silencing
title_full_unstemmed Durable CRISPR-Based Epigenetic Silencing
title_sort durable crispr-based epigenetic silencing
publisher American Association for the Advancement of Science
series BioDesign Research
issn 2693-1257
publishDate 2021-01-01
description Development of CRISPR-based epigenome editing tools is important for the study and engineering of biological behavior. Here, we describe the design of a reporter system for quantifying the ability of CRISPR epigenome editors to produce a stable gene repression. We characterize the dynamics of durable gene silencing and reactivation, as well as the induced epigenetic changes of this system. We report the creation of single-protein CRISPR constructs bearing combinations of three epigenetic editing domains, termed KAL, that can stably repress the gene expression. This system should allow for the development of novel epigenome editing tools which will be useful in a wide array of biological research and engineering applications.
url http://dx.doi.org/10.34133/2021/9815820
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