Different Machine Learning and Deep Learning Methods for the Classification of Colorectal Cancer Lymph Node Metastasis Images

The classification of colorectal cancer (CRC) lymph node metastasis (LNM) is a vital clinical issue related to recurrence and design of treatment plans. However, it remains unclear which method is effective in automatically classifying CRC LNM. Hence, this study compared the performance of existing...

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Main Authors: Jin Li, Peng Wang, Yang Zhou, Hong Liang, Kuan Luan
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-01-01
Series:Frontiers in Bioengineering and Biotechnology
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fbioe.2020.620257/full
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spelling doaj-4370ad66f7fe4d15a69d9eb0259471ff2021-01-14T06:35:21ZengFrontiers Media S.A.Frontiers in Bioengineering and Biotechnology2296-41852021-01-01810.3389/fbioe.2020.620257620257Different Machine Learning and Deep Learning Methods for the Classification of Colorectal Cancer Lymph Node Metastasis ImagesJin Li0Peng Wang1Yang Zhou2Yang Zhou3Hong Liang4Kuan Luan5College of Intelligent System Science and Engineering, Harbin Engineering University, Harbin, ChinaCollege of Intelligent System Science and Engineering, Harbin Engineering University, Harbin, ChinaCollege of Intelligent System Science and Engineering, Harbin Engineering University, Harbin, ChinaDepartment of Radiology, Harbin Medical University Cancer Hospital, Harbin, ChinaCollege of Intelligent System Science and Engineering, Harbin Engineering University, Harbin, ChinaCollege of Intelligent System Science and Engineering, Harbin Engineering University, Harbin, ChinaThe classification of colorectal cancer (CRC) lymph node metastasis (LNM) is a vital clinical issue related to recurrence and design of treatment plans. However, it remains unclear which method is effective in automatically classifying CRC LNM. Hence, this study compared the performance of existing classification methods, i.e., machine learning, deep learning, and deep transfer learning, to identify the most effective method. A total of 3,364 samples (1,646 positive and 1,718 negative) from Harbin Medical University Cancer Hospital were collected. All patches were manually segmented by experienced radiologists, and the image size was based on the lesion to be intercepted. Two classes of global features and one class of local features were extracted from the patches. These features were used in eight machine learning algorithms, while the other models used raw data. Experiment results showed that deep transfer learning was the most effective method with an accuracy of 0.7583 and an area under the curve of 0.7941. Furthermore, to improve the interpretability of the results from the deep learning and deep transfer learning models, the classification heat-map features were used, which displayed the region of feature extraction by superposing with raw data. The research findings are expected to promote the use of effective methods in CRC LNM detection and hence facilitate the design of proper treatment plans.https://www.frontiersin.org/articles/10.3389/fbioe.2020.620257/fullcolorectal cancerlymph nodeclassificationtransfer learningdeep learning
collection DOAJ
language English
format Article
sources DOAJ
author Jin Li
Peng Wang
Yang Zhou
Yang Zhou
Hong Liang
Kuan Luan
spellingShingle Jin Li
Peng Wang
Yang Zhou
Yang Zhou
Hong Liang
Kuan Luan
Different Machine Learning and Deep Learning Methods for the Classification of Colorectal Cancer Lymph Node Metastasis Images
Frontiers in Bioengineering and Biotechnology
colorectal cancer
lymph node
classification
transfer learning
deep learning
author_facet Jin Li
Peng Wang
Yang Zhou
Yang Zhou
Hong Liang
Kuan Luan
author_sort Jin Li
title Different Machine Learning and Deep Learning Methods for the Classification of Colorectal Cancer Lymph Node Metastasis Images
title_short Different Machine Learning and Deep Learning Methods for the Classification of Colorectal Cancer Lymph Node Metastasis Images
title_full Different Machine Learning and Deep Learning Methods for the Classification of Colorectal Cancer Lymph Node Metastasis Images
title_fullStr Different Machine Learning and Deep Learning Methods for the Classification of Colorectal Cancer Lymph Node Metastasis Images
title_full_unstemmed Different Machine Learning and Deep Learning Methods for the Classification of Colorectal Cancer Lymph Node Metastasis Images
title_sort different machine learning and deep learning methods for the classification of colorectal cancer lymph node metastasis images
publisher Frontiers Media S.A.
series Frontiers in Bioengineering and Biotechnology
issn 2296-4185
publishDate 2021-01-01
description The classification of colorectal cancer (CRC) lymph node metastasis (LNM) is a vital clinical issue related to recurrence and design of treatment plans. However, it remains unclear which method is effective in automatically classifying CRC LNM. Hence, this study compared the performance of existing classification methods, i.e., machine learning, deep learning, and deep transfer learning, to identify the most effective method. A total of 3,364 samples (1,646 positive and 1,718 negative) from Harbin Medical University Cancer Hospital were collected. All patches were manually segmented by experienced radiologists, and the image size was based on the lesion to be intercepted. Two classes of global features and one class of local features were extracted from the patches. These features were used in eight machine learning algorithms, while the other models used raw data. Experiment results showed that deep transfer learning was the most effective method with an accuracy of 0.7583 and an area under the curve of 0.7941. Furthermore, to improve the interpretability of the results from the deep learning and deep transfer learning models, the classification heat-map features were used, which displayed the region of feature extraction by superposing with raw data. The research findings are expected to promote the use of effective methods in CRC LNM detection and hence facilitate the design of proper treatment plans.
topic colorectal cancer
lymph node
classification
transfer learning
deep learning
url https://www.frontiersin.org/articles/10.3389/fbioe.2020.620257/full
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AT yangzhou differentmachinelearninganddeeplearningmethodsfortheclassificationofcolorectalcancerlymphnodemetastasisimages
AT yangzhou differentmachinelearninganddeeplearningmethodsfortheclassificationofcolorectalcancerlymphnodemetastasisimages
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