Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field

To investigate the diversity of butane-oxidizing bacteria in soils contaminated by long-term light hydrocarbon microseepage and the influence of butane on the soil microbial community, a quantitative study and identification of butane-oxidizing bacteria (BOB) in soils at the Puguang gas field were p...

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Main Authors: Yue Deng, Chunping Deng, Jinshui Yang, Baozhen Li, Entao Wang, Hongli Yuan
Format: Article
Language:English
Published: Frontiers Media S.A. 2018-07-01
Series:Frontiers in Microbiology
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fmicb.2018.01576/full
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spelling doaj-43640694ca8f4fe19d4366c43e1706982020-11-24T23:10:18ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2018-07-01910.3389/fmicb.2018.01576376328Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas FieldYue Deng0Chunping Deng1Jinshui Yang2Baozhen Li3Entao Wang4Hongli Yuan5State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, ChinaState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, ChinaState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, ChinaState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, ChinaDepartamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, MexicoState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, ChinaTo investigate the diversity of butane-oxidizing bacteria in soils contaminated by long-term light hydrocarbon microseepage and the influence of butane on the soil microbial community, a quantitative study and identification of butane-oxidizing bacteria (BOB) in soils at the Puguang gas field were performed by DNA-based stable isotope probing (DNA-SIP). For the first time, two phylotypes corresponding to the genera Giesbergeria and Ramlibacter were identified as being directly involved in butane oxidation, in addition to the well-known light hydrocarbon degrader Pseudomonas. Furthermore, bmoX genes were strongly labeled by 13C-butane, and their abundances in gas field soils increased by 43.14-, 17.39-, 21.74-, and 30.14-fold when incubated with butane for 6, 9, 12, and 14 days, respectively, indicating that these bmoX-harboring bacteria could use butane as the sole carbon and energy source and they play an important role in butane degradation. We also found that the addition of butane rapidly shaped the bacterial community and reduced the diversity of bmoX genes in the gas field soils. These findings improve our understanding of BOB in the gas field environment and reveal the potential for their applications in petroleum exploration and bioremediation.https://www.frontiersin.org/article/10.3389/fmicb.2018.01576/fullbutane-oxidizing bacteriaDNA-SIPreal-time quantitative PCRbmoX genelight hydrocarbon microseepage
collection DOAJ
language English
format Article
sources DOAJ
author Yue Deng
Chunping Deng
Jinshui Yang
Baozhen Li
Entao Wang
Hongli Yuan
spellingShingle Yue Deng
Chunping Deng
Jinshui Yang
Baozhen Li
Entao Wang
Hongli Yuan
Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field
Frontiers in Microbiology
butane-oxidizing bacteria
DNA-SIP
real-time quantitative PCR
bmoX gene
light hydrocarbon microseepage
author_facet Yue Deng
Chunping Deng
Jinshui Yang
Baozhen Li
Entao Wang
Hongli Yuan
author_sort Yue Deng
title Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field
title_short Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field
title_full Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field
title_fullStr Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field
title_full_unstemmed Novel Butane-Oxidizing Bacteria and Diversity of bmoX Genes in Puguang Gas Field
title_sort novel butane-oxidizing bacteria and diversity of bmox genes in puguang gas field
publisher Frontiers Media S.A.
series Frontiers in Microbiology
issn 1664-302X
publishDate 2018-07-01
description To investigate the diversity of butane-oxidizing bacteria in soils contaminated by long-term light hydrocarbon microseepage and the influence of butane on the soil microbial community, a quantitative study and identification of butane-oxidizing bacteria (BOB) in soils at the Puguang gas field were performed by DNA-based stable isotope probing (DNA-SIP). For the first time, two phylotypes corresponding to the genera Giesbergeria and Ramlibacter were identified as being directly involved in butane oxidation, in addition to the well-known light hydrocarbon degrader Pseudomonas. Furthermore, bmoX genes were strongly labeled by 13C-butane, and their abundances in gas field soils increased by 43.14-, 17.39-, 21.74-, and 30.14-fold when incubated with butane for 6, 9, 12, and 14 days, respectively, indicating that these bmoX-harboring bacteria could use butane as the sole carbon and energy source and they play an important role in butane degradation. We also found that the addition of butane rapidly shaped the bacterial community and reduced the diversity of bmoX genes in the gas field soils. These findings improve our understanding of BOB in the gas field environment and reveal the potential for their applications in petroleum exploration and bioremediation.
topic butane-oxidizing bacteria
DNA-SIP
real-time quantitative PCR
bmoX gene
light hydrocarbon microseepage
url https://www.frontiersin.org/article/10.3389/fmicb.2018.01576/full
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AT jinshuiyang novelbutaneoxidizingbacteriaanddiversityofbmoxgenesinpuguanggasfield
AT baozhenli novelbutaneoxidizingbacteriaanddiversityofbmoxgenesinpuguanggasfield
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