Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems

Microbial taxa within complex ecological networks can be classified by their universal roles based on their level of connectivity with other taxa. Highly connected taxa within an ecological network (kinless hubs) are theoretically expected to support higher levels of ecosystem functions than less co...

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Main Authors: Yu Shi, Manuel Delgado-Baquerizo, Yuntao Li, Yunfeng Yang, Yong-Guan Zhu, Josep Peñuelas, Haiyan Chu
Format: Article
Language:English
Published: Elsevier 2020-09-01
Series:Environment International
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S0160412020318249
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spelling doaj-435f9912cf404eaa92037da3cd6355242020-11-25T03:02:11ZengElsevierEnvironment International0160-41202020-09-01142105869Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystemsYu Shi0Manuel Delgado-Baquerizo1Yuntao Li2Yunfeng Yang3Yong-Guan Zhu4Josep Peñuelas5Haiyan Chu6State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, ChinaDepartamento de Sistemas Físicos, Químicos y Naturales, Universidad Pablo de Olavide, 41013 Sevilla, SpainState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, ChinaState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, ChinaKey Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; State Key Lab of Urban and Regional Ecology, Research Centre for Eco-environmental Sciences, Chinese Academy of Sciences, Beijing 10085, China; Corresponding authors at: Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China (Y.-G. Zhu).CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Catalonia E-08193, Spain; CREAF, Cerdanyola del Vallès, Catalonia E-08193, SpainState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing 210008, China; Corresponding authors at: Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China (Y.-G. Zhu).Microbial taxa within complex ecological networks can be classified by their universal roles based on their level of connectivity with other taxa. Highly connected taxa within an ecological network (kinless hubs) are theoretically expected to support higher levels of ecosystem functions than less connected taxa (peripherals). Empirical evidence of the role of kinless hubs in regulating the functional potential of soil microbial communities, however, is largely unexplored and poorly understood in agricultural ecosystems. Here, we built a correlation network of fungal and bacterial taxa using a large-scale survey consisting of 243 soil samples across functionally and economically important agricultural ecosystems (wheat and maize); and found that the relative abundance of taxa classified as kinless hubs within the ecological network are positively and significantly correlated with the abundance of functional genes including genes for C fixation, C degradation, C methanol, N cycling, P cycling and S cycling. Structural equation modeling of multiple soil properties further indicated that kinless hubs, but not provincial, connector or peripheral taxa, had direct significant and positive relationships with the abundance of multiple functional genes. Our findings provide novel evidence that the relative abundance of soil taxa classified as kinless hubs within microbial networks are associated with high functional potential, with implications for understanding and managing (through manipulating microbial key species) agricultural ecosystems at a large spatial scale.http://www.sciencedirect.com/science/article/pii/S0160412020318249Microbial networkKinless hubFunctional geneFungiBacteria
collection DOAJ
language English
format Article
sources DOAJ
author Yu Shi
Manuel Delgado-Baquerizo
Yuntao Li
Yunfeng Yang
Yong-Guan Zhu
Josep Peñuelas
Haiyan Chu
spellingShingle Yu Shi
Manuel Delgado-Baquerizo
Yuntao Li
Yunfeng Yang
Yong-Guan Zhu
Josep Peñuelas
Haiyan Chu
Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems
Environment International
Microbial network
Kinless hub
Functional gene
Fungi
Bacteria
author_facet Yu Shi
Manuel Delgado-Baquerizo
Yuntao Li
Yunfeng Yang
Yong-Guan Zhu
Josep Peñuelas
Haiyan Chu
author_sort Yu Shi
title Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems
title_short Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems
title_full Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems
title_fullStr Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems
title_full_unstemmed Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems
title_sort abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems
publisher Elsevier
series Environment International
issn 0160-4120
publishDate 2020-09-01
description Microbial taxa within complex ecological networks can be classified by their universal roles based on their level of connectivity with other taxa. Highly connected taxa within an ecological network (kinless hubs) are theoretically expected to support higher levels of ecosystem functions than less connected taxa (peripherals). Empirical evidence of the role of kinless hubs in regulating the functional potential of soil microbial communities, however, is largely unexplored and poorly understood in agricultural ecosystems. Here, we built a correlation network of fungal and bacterial taxa using a large-scale survey consisting of 243 soil samples across functionally and economically important agricultural ecosystems (wheat and maize); and found that the relative abundance of taxa classified as kinless hubs within the ecological network are positively and significantly correlated with the abundance of functional genes including genes for C fixation, C degradation, C methanol, N cycling, P cycling and S cycling. Structural equation modeling of multiple soil properties further indicated that kinless hubs, but not provincial, connector or peripheral taxa, had direct significant and positive relationships with the abundance of multiple functional genes. Our findings provide novel evidence that the relative abundance of soil taxa classified as kinless hubs within microbial networks are associated with high functional potential, with implications for understanding and managing (through manipulating microbial key species) agricultural ecosystems at a large spatial scale.
topic Microbial network
Kinless hub
Functional gene
Fungi
Bacteria
url http://www.sciencedirect.com/science/article/pii/S0160412020318249
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