Label-Free White Blood Cell Classification Using Refractive Index Tomography and Deep Learning

Objective and Impact Statement. We propose a rapid and accurate blood cell identification method exploiting deep learning and label-free refractive index (RI) tomography. Our computational approach that fully utilizes tomographic information of bone marrow (BM) white blood cell (WBC) enables us to n...

Full description

Bibliographic Details
Main Authors: DongHun Ryu, Jinho Kim, Daejin Lim, Hyun-Seok Min, In Young Yoo, Duck Cho, YongKeun Park
Format: Article
Language:English
Published: American Association for the Advancement of Science 2021-01-01
Series:BME Frontiers
Online Access:http://dx.doi.org/10.34133/2021/9893804
id doaj-4292985c7c554df984bd505a4b14ac63
record_format Article
spelling doaj-4292985c7c554df984bd505a4b14ac632021-08-09T08:20:03ZengAmerican Association for the Advancement of ScienceBME Frontiers2765-80312021-01-01202110.34133/2021/9893804Label-Free White Blood Cell Classification Using Refractive Index Tomography and Deep LearningDongHun Ryu0DongHun Ryu1Jinho Kim2Daejin Lim3Daejin Lim4Hyun-Seok Min5In Young Yoo6Duck Cho7Duck Cho8Duck Cho9YongKeun Park10YongKeun Park11YongKeun Park12Department of Physics,Korea Advanced Institute of Science and Technology (KAIST),Daejeon 34141,Republic of KoreaKAIST Institute for Health Science and Technology,KAIST,Daejeon 34141,Republic of KoreaDepartment of Health Sciences and Technology,Samsung Advanced Institute For Health Sciences and Technology,Sungkyunkwan University,Seoul 06355,Republic of KoreaDepartment of Health and Safety Convergence Science,Korea University,Seoul 02841,Republic of KoreaDepartment of Laboratory Medicine and Genetics,Samsung Medical Center,Sungkyunkwan University School of Medicine,Seoul 06351,Republic of KoreaTomocube,Inc.,Daejeon 34051,Republic of KoreaDepartment of Laboratory Medicine,Seoul St. Mary’s Hospital,College of Medicine,The Catholic University of Korea, Seoul 06591,Republic of KoreaDepartment of Health Sciences and Technology,Samsung Advanced Institute For Health Sciences and Technology,Sungkyunkwan University,Seoul 06355,Republic of KoreaDepartment of Laboratory Medicine and Genetics,Samsung Medical Center,Sungkyunkwan University School of Medicine,Seoul 06351,Republic of KoreaStem Cell & Regenerative Medicine Institute,Samsung Medical Center,Seoul 06531,Republic of KoreaKAIST Institute for Health Science and Technology,KAIST,Daejeon 34141,Republic of KoreaDepartment of Health Sciences and Technology,Samsung Advanced Institute For Health Sciences and Technology,Sungkyunkwan University,Seoul 06355,Republic of KoreaTomocube,Inc.,Daejeon 34051,Republic of KoreaObjective and Impact Statement. We propose a rapid and accurate blood cell identification method exploiting deep learning and label-free refractive index (RI) tomography. Our computational approach that fully utilizes tomographic information of bone marrow (BM) white blood cell (WBC) enables us to not only classify the blood cells with deep learning but also quantitatively study their morphological and biochemical properties for hematology research. Introduction. Conventional methods for examining blood cells, such as blood smear analysis by medical professionals and fluorescence-activated cell sorting, require significant time, costs, and domain knowledge that could affect test results. While label-free imaging techniques that use a specimen’s intrinsic contrast (e.g., multiphoton and Raman microscopy) have been used to characterize blood cells, their imaging procedures and instrumentations are relatively time-consuming and complex. Methods. The RI tomograms of the BM WBCs are acquired via Mach-Zehnder interferometer-based tomographic microscope and classified by a 3D convolutional neural network. We test our deep learning classifier for the four types of bone marrow WBC collected from healthy donors (n=10): monocyte, myelocyte, B lymphocyte, and T lymphocyte. The quantitative parameters of WBC are directly obtained from the tomograms. Results. Our results show >99% accuracy for the binary classification of myeloids and lymphoids and >96% accuracy for the four-type classification of B and T lymphocytes, monocyte, and myelocytes. The feature learning capability of our approach is visualized via an unsupervised dimension reduction technique. Conclusion. We envision that the proposed cell classification framework can be easily integrated into existing blood cell investigation workflows, providing cost-effective and rapid diagnosis for hematologic malignancy.http://dx.doi.org/10.34133/2021/9893804
collection DOAJ
language English
format Article
sources DOAJ
author DongHun Ryu
DongHun Ryu
Jinho Kim
Daejin Lim
Daejin Lim
Hyun-Seok Min
In Young Yoo
Duck Cho
Duck Cho
Duck Cho
YongKeun Park
YongKeun Park
YongKeun Park
spellingShingle DongHun Ryu
DongHun Ryu
Jinho Kim
Daejin Lim
Daejin Lim
Hyun-Seok Min
In Young Yoo
Duck Cho
Duck Cho
Duck Cho
YongKeun Park
YongKeun Park
YongKeun Park
Label-Free White Blood Cell Classification Using Refractive Index Tomography and Deep Learning
BME Frontiers
author_facet DongHun Ryu
DongHun Ryu
Jinho Kim
Daejin Lim
Daejin Lim
Hyun-Seok Min
In Young Yoo
Duck Cho
Duck Cho
Duck Cho
YongKeun Park
YongKeun Park
YongKeun Park
author_sort DongHun Ryu
title Label-Free White Blood Cell Classification Using Refractive Index Tomography and Deep Learning
title_short Label-Free White Blood Cell Classification Using Refractive Index Tomography and Deep Learning
title_full Label-Free White Blood Cell Classification Using Refractive Index Tomography and Deep Learning
title_fullStr Label-Free White Blood Cell Classification Using Refractive Index Tomography and Deep Learning
title_full_unstemmed Label-Free White Blood Cell Classification Using Refractive Index Tomography and Deep Learning
title_sort label-free white blood cell classification using refractive index tomography and deep learning
publisher American Association for the Advancement of Science
series BME Frontiers
issn 2765-8031
publishDate 2021-01-01
description Objective and Impact Statement. We propose a rapid and accurate blood cell identification method exploiting deep learning and label-free refractive index (RI) tomography. Our computational approach that fully utilizes tomographic information of bone marrow (BM) white blood cell (WBC) enables us to not only classify the blood cells with deep learning but also quantitatively study their morphological and biochemical properties for hematology research. Introduction. Conventional methods for examining blood cells, such as blood smear analysis by medical professionals and fluorescence-activated cell sorting, require significant time, costs, and domain knowledge that could affect test results. While label-free imaging techniques that use a specimen’s intrinsic contrast (e.g., multiphoton and Raman microscopy) have been used to characterize blood cells, their imaging procedures and instrumentations are relatively time-consuming and complex. Methods. The RI tomograms of the BM WBCs are acquired via Mach-Zehnder interferometer-based tomographic microscope and classified by a 3D convolutional neural network. We test our deep learning classifier for the four types of bone marrow WBC collected from healthy donors (n=10): monocyte, myelocyte, B lymphocyte, and T lymphocyte. The quantitative parameters of WBC are directly obtained from the tomograms. Results. Our results show >99% accuracy for the binary classification of myeloids and lymphoids and >96% accuracy for the four-type classification of B and T lymphocytes, monocyte, and myelocytes. The feature learning capability of our approach is visualized via an unsupervised dimension reduction technique. Conclusion. We envision that the proposed cell classification framework can be easily integrated into existing blood cell investigation workflows, providing cost-effective and rapid diagnosis for hematologic malignancy.
url http://dx.doi.org/10.34133/2021/9893804
work_keys_str_mv AT donghunryu labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT donghunryu labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT jinhokim labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT daejinlim labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT daejinlim labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT hyunseokmin labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT inyoungyoo labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT duckcho labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT duckcho labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT duckcho labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT yongkeunpark labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT yongkeunpark labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
AT yongkeunpark labelfreewhitebloodcellclassificationusingrefractiveindextomographyanddeeplearning
_version_ 1721214957369950208