Mechanism of activation at the selectivity filter of the KcsA K+ channel

Potassium channels are opened by ligands and/or membrane potential. In voltage-gated K+ channels and the prokaryotic KcsA channel, conduction is believed to result from opening of an intracellular constriction that prevents ion entry into the pore. On the other hand, numerous ligand-gated K+ channel...

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Main Authors: Florian T Heer, David J Posson, Wojciech Wojtas-Niziurski, Crina M Nimigean, Simon Bernèche
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2017-10-01
Series:eLife
Subjects:
Online Access:https://elifesciences.org/articles/25844
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spelling doaj-401d53a3f00a424abd5f848f513248582021-05-05T13:51:47ZengeLife Sciences Publications LtdeLife2050-084X2017-10-01610.7554/eLife.25844Mechanism of activation at the selectivity filter of the KcsA K+ channelFlorian T Heer0David J Posson1https://orcid.org/0000-0002-6491-8238Wojciech Wojtas-Niziurski2Crina M Nimigean3https://orcid.org/0000-0002-6254-4447Simon Bernèche4https://orcid.org/0000-0002-6274-4094SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland; Biozentrum, University of Basel, Basel, SwitzerlandDepartment of Anesthesiology, Weill Cornell Medical College, New York, United States; Department of Physiology and Biophysics, Weill Cornell Medical College, New York, United StatesSIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland; Biozentrum, University of Basel, Basel, SwitzerlandDepartment of Anesthesiology, Weill Cornell Medical College, New York, United States; Department of Physiology and Biophysics, Weill Cornell Medical College, New York, United States; Department of Biochemistry, Weill Cornell Medical College, New York, United StatesSIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland; Biozentrum, University of Basel, Basel, SwitzerlandPotassium channels are opened by ligands and/or membrane potential. In voltage-gated K+ channels and the prokaryotic KcsA channel, conduction is believed to result from opening of an intracellular constriction that prevents ion entry into the pore. On the other hand, numerous ligand-gated K+ channels lack such gate, suggesting that they may be activated by a change within the selectivity filter, a narrow region at the extracellular side of the pore. Using molecular dynamics simulations and electrophysiology measurements, we show that ligand-induced conformational changes in the KcsA channel removes steric restraints at the selectivity filter, thus resulting in structural fluctuations, reduced K+ affinity, and increased ion permeation. Such activation of the selectivity filter may be a universal gating mechanism within K+ channels. The occlusion of the pore at the level of the intracellular gate appears to be secondary.https://elifesciences.org/articles/25844ion channelconductancegatingpH gatedallosterymolecular dynamics
collection DOAJ
language English
format Article
sources DOAJ
author Florian T Heer
David J Posson
Wojciech Wojtas-Niziurski
Crina M Nimigean
Simon Bernèche
spellingShingle Florian T Heer
David J Posson
Wojciech Wojtas-Niziurski
Crina M Nimigean
Simon Bernèche
Mechanism of activation at the selectivity filter of the KcsA K+ channel
eLife
ion channel
conductance
gating
pH gated
allostery
molecular dynamics
author_facet Florian T Heer
David J Posson
Wojciech Wojtas-Niziurski
Crina M Nimigean
Simon Bernèche
author_sort Florian T Heer
title Mechanism of activation at the selectivity filter of the KcsA K+ channel
title_short Mechanism of activation at the selectivity filter of the KcsA K+ channel
title_full Mechanism of activation at the selectivity filter of the KcsA K+ channel
title_fullStr Mechanism of activation at the selectivity filter of the KcsA K+ channel
title_full_unstemmed Mechanism of activation at the selectivity filter of the KcsA K+ channel
title_sort mechanism of activation at the selectivity filter of the kcsa k+ channel
publisher eLife Sciences Publications Ltd
series eLife
issn 2050-084X
publishDate 2017-10-01
description Potassium channels are opened by ligands and/or membrane potential. In voltage-gated K+ channels and the prokaryotic KcsA channel, conduction is believed to result from opening of an intracellular constriction that prevents ion entry into the pore. On the other hand, numerous ligand-gated K+ channels lack such gate, suggesting that they may be activated by a change within the selectivity filter, a narrow region at the extracellular side of the pore. Using molecular dynamics simulations and electrophysiology measurements, we show that ligand-induced conformational changes in the KcsA channel removes steric restraints at the selectivity filter, thus resulting in structural fluctuations, reduced K+ affinity, and increased ion permeation. Such activation of the selectivity filter may be a universal gating mechanism within K+ channels. The occlusion of the pore at the level of the intracellular gate appears to be secondary.
topic ion channel
conductance
gating
pH gated
allostery
molecular dynamics
url https://elifesciences.org/articles/25844
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AT wojciechwojtasniziurski mechanismofactivationattheselectivityfilterofthekcsakchannel
AT crinamnimigean mechanismofactivationattheselectivityfilterofthekcsakchannel
AT simonberneche mechanismofactivationattheselectivityfilterofthekcsakchannel
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