NUTMEG: Open Source Software for M/EEG Source Reconstruction

Neurodynamic Utility Toolbox for Magnetoencephalo- and Electroencephalography (NUTMEG) is an open-source MATLAB-based toolbox for the analysis and reconstruction of magnetoencephalography/electroencephalography data in source space. NUTMEG includes a variety of options for the user in data import, p...

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Main Authors: Leighton B. N. Hinkley, Corby L. Dale, Chang Cai, Johanna Zumer, Sarang Dalal, Anne Findlay, Kensuke Sekihara, Srikantan S. Nagarajan
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-08-01
Series:Frontiers in Neuroscience
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fnins.2020.00710/full
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spelling doaj-3eb955a6b7d54f928bd35242d3e92f612020-11-25T03:42:42ZengFrontiers Media S.A.Frontiers in Neuroscience1662-453X2020-08-011410.3389/fnins.2020.00710493173NUTMEG: Open Source Software for M/EEG Source ReconstructionLeighton B. N. Hinkley0Corby L. Dale1Chang Cai2Johanna Zumer3Sarang Dalal4Anne Findlay5Kensuke Sekihara6Srikantan S. Nagarajan7Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United StatesDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United StatesDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United StatesDepartment of Psychology, University of Birmingham, Birmingham, United KingdomAarhus University, Aarhus, DenmarkDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United StatesTokyo Medical and Dental University, Tokyo, JapanDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United StatesNeurodynamic Utility Toolbox for Magnetoencephalo- and Electroencephalography (NUTMEG) is an open-source MATLAB-based toolbox for the analysis and reconstruction of magnetoencephalography/electroencephalography data in source space. NUTMEG includes a variety of options for the user in data import, preprocessing, source reconstruction, and functional connectivity. A group analysis toolbox allows the user to run a variety of inferential statistics on their data in an easy-to-use GUI-driven format. Importantly, NUTMEG features an interactive five-dimensional data visualization platform. A key feature of NUTMEG is the availability of a large menu of interference cancelation and source reconstruction algorithms. Each NUTMEG operation acts as a stand-alone MATLAB function, allowing the package to be easily adaptable and scripted for the more advanced user for interoperability with other software toolboxes. Therefore, NUTMEG enables a wide range of users access to a complete “sensor-to- source-statistics” analysis pipeline.https://www.frontiersin.org/article/10.3389/fnins.2020.00710/fullsoftwaresource space analysisMATLABelectroencephalographymagnetoencephalography
collection DOAJ
language English
format Article
sources DOAJ
author Leighton B. N. Hinkley
Corby L. Dale
Chang Cai
Johanna Zumer
Sarang Dalal
Anne Findlay
Kensuke Sekihara
Srikantan S. Nagarajan
spellingShingle Leighton B. N. Hinkley
Corby L. Dale
Chang Cai
Johanna Zumer
Sarang Dalal
Anne Findlay
Kensuke Sekihara
Srikantan S. Nagarajan
NUTMEG: Open Source Software for M/EEG Source Reconstruction
Frontiers in Neuroscience
software
source space analysis
MATLAB
electroencephalography
magnetoencephalography
author_facet Leighton B. N. Hinkley
Corby L. Dale
Chang Cai
Johanna Zumer
Sarang Dalal
Anne Findlay
Kensuke Sekihara
Srikantan S. Nagarajan
author_sort Leighton B. N. Hinkley
title NUTMEG: Open Source Software for M/EEG Source Reconstruction
title_short NUTMEG: Open Source Software for M/EEG Source Reconstruction
title_full NUTMEG: Open Source Software for M/EEG Source Reconstruction
title_fullStr NUTMEG: Open Source Software for M/EEG Source Reconstruction
title_full_unstemmed NUTMEG: Open Source Software for M/EEG Source Reconstruction
title_sort nutmeg: open source software for m/eeg source reconstruction
publisher Frontiers Media S.A.
series Frontiers in Neuroscience
issn 1662-453X
publishDate 2020-08-01
description Neurodynamic Utility Toolbox for Magnetoencephalo- and Electroencephalography (NUTMEG) is an open-source MATLAB-based toolbox for the analysis and reconstruction of magnetoencephalography/electroencephalography data in source space. NUTMEG includes a variety of options for the user in data import, preprocessing, source reconstruction, and functional connectivity. A group analysis toolbox allows the user to run a variety of inferential statistics on their data in an easy-to-use GUI-driven format. Importantly, NUTMEG features an interactive five-dimensional data visualization platform. A key feature of NUTMEG is the availability of a large menu of interference cancelation and source reconstruction algorithms. Each NUTMEG operation acts as a stand-alone MATLAB function, allowing the package to be easily adaptable and scripted for the more advanced user for interoperability with other software toolboxes. Therefore, NUTMEG enables a wide range of users access to a complete “sensor-to- source-statistics” analysis pipeline.
topic software
source space analysis
MATLAB
electroencephalography
magnetoencephalography
url https://www.frontiersin.org/article/10.3389/fnins.2020.00710/full
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