An Overview of Genes From Cyberlindnera americana, a Symbiont Yeast Isolated From the Gut of the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome Data

Bark beetles from Dendroctonus genus promote ecological succession and nutrient cycling in coniferous forests. However, they can trigger outbreaks leading to important economic losses in the forest industry. Conifers have evolved resistance mechanisms that can be toxic to insects but at the same tim...

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Main Authors: L. Viridiana Soto-Robles, Verónica Torres-Banda, Flor N. Rivera-Orduña, Everardo Curiel-Quesada, María Eugenia Hidalgo-Lara, Gerardo Zúñiga
Format: Article
Language:English
Published: Frontiers Media S.A. 2019-09-01
Series:Frontiers in Microbiology
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fmicb.2019.02180/full
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spelling doaj-3e638e526bfc4c61b2fb2213f13ec1bd2020-11-25T02:14:07ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2019-09-011010.3389/fmicb.2019.02180469574An Overview of Genes From Cyberlindnera americana, a Symbiont Yeast Isolated From the Gut of the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome DataL. Viridiana Soto-Robles0Verónica Torres-Banda1Flor N. Rivera-Orduña2Everardo Curiel-Quesada3María Eugenia Hidalgo-Lara4Gerardo Zúñiga5Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, MexicoEscuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, MexicoEscuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, MexicoEscuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, MexicoCentro de Investigación y de Estudios Avanzados, Instituto Politécnico Nacional, Mexico City, MexicoEscuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, MexicoBark beetles from Dendroctonus genus promote ecological succession and nutrient cycling in coniferous forests. However, they can trigger outbreaks leading to important economic losses in the forest industry. Conifers have evolved resistance mechanisms that can be toxic to insects but at the same time, bark beetles are capable of overcoming tree barriers and colonize these habitats. In this sense, symbiont yeasts present in the gut of bark beetles have been suggested to play a role in the detoxification process of tree defensive chemicals. In the present study, genes related to this process were identified and their response to a terpene highly toxic to bark beetles and their symbionts was analyzed in the Cyberlindnera americana yeast. The genome and transcriptome of C. americana (ChDrAdgY46) isolated from the gut of Dendroctonus rhizophagus were presented. Genome analysis identified 5752 protein-coding genes and diverse gene families associated with the detoxification process. The most abundant belonged to the Aldo-Keto Reductase Superfamily, ATP-binding cassette Superfamily, and the Major Facilitator Superfamily transporters. The transcriptome analysis of non-α-pinene stimulated and α-pinene stimulated yeasts showed a significant expression of genes belonging to these families. The activities demonstrated by the genes identified as Aryl-alcohol dehydrogenase and ABC transporter under (+)-α-pinene suggest that they are responsible, that C. americana is a dominant symbiont that resists high amounts of monoterpenes inside the gut of bark beetles.https://www.frontiersin.org/article/10.3389/fmicb.2019.02180/fullgenomedetoxificationMDR transportersα-pinenetranscriptomebark beetles
collection DOAJ
language English
format Article
sources DOAJ
author L. Viridiana Soto-Robles
Verónica Torres-Banda
Flor N. Rivera-Orduña
Everardo Curiel-Quesada
María Eugenia Hidalgo-Lara
Gerardo Zúñiga
spellingShingle L. Viridiana Soto-Robles
Verónica Torres-Banda
Flor N. Rivera-Orduña
Everardo Curiel-Quesada
María Eugenia Hidalgo-Lara
Gerardo Zúñiga
An Overview of Genes From Cyberlindnera americana, a Symbiont Yeast Isolated From the Gut of the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome Data
Frontiers in Microbiology
genome
detoxification
MDR transporters
α-pinene
transcriptome
bark beetles
author_facet L. Viridiana Soto-Robles
Verónica Torres-Banda
Flor N. Rivera-Orduña
Everardo Curiel-Quesada
María Eugenia Hidalgo-Lara
Gerardo Zúñiga
author_sort L. Viridiana Soto-Robles
title An Overview of Genes From Cyberlindnera americana, a Symbiont Yeast Isolated From the Gut of the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome Data
title_short An Overview of Genes From Cyberlindnera americana, a Symbiont Yeast Isolated From the Gut of the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome Data
title_full An Overview of Genes From Cyberlindnera americana, a Symbiont Yeast Isolated From the Gut of the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome Data
title_fullStr An Overview of Genes From Cyberlindnera americana, a Symbiont Yeast Isolated From the Gut of the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome Data
title_full_unstemmed An Overview of Genes From Cyberlindnera americana, a Symbiont Yeast Isolated From the Gut of the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome Data
title_sort overview of genes from cyberlindnera americana, a symbiont yeast isolated from the gut of the bark beetle dendroctonus rhizophagus (curculionidae: scolytinae), involved in the detoxification process using genome and transcriptome data
publisher Frontiers Media S.A.
series Frontiers in Microbiology
issn 1664-302X
publishDate 2019-09-01
description Bark beetles from Dendroctonus genus promote ecological succession and nutrient cycling in coniferous forests. However, they can trigger outbreaks leading to important economic losses in the forest industry. Conifers have evolved resistance mechanisms that can be toxic to insects but at the same time, bark beetles are capable of overcoming tree barriers and colonize these habitats. In this sense, symbiont yeasts present in the gut of bark beetles have been suggested to play a role in the detoxification process of tree defensive chemicals. In the present study, genes related to this process were identified and their response to a terpene highly toxic to bark beetles and their symbionts was analyzed in the Cyberlindnera americana yeast. The genome and transcriptome of C. americana (ChDrAdgY46) isolated from the gut of Dendroctonus rhizophagus were presented. Genome analysis identified 5752 protein-coding genes and diverse gene families associated with the detoxification process. The most abundant belonged to the Aldo-Keto Reductase Superfamily, ATP-binding cassette Superfamily, and the Major Facilitator Superfamily transporters. The transcriptome analysis of non-α-pinene stimulated and α-pinene stimulated yeasts showed a significant expression of genes belonging to these families. The activities demonstrated by the genes identified as Aryl-alcohol dehydrogenase and ABC transporter under (+)-α-pinene suggest that they are responsible, that C. americana is a dominant symbiont that resists high amounts of monoterpenes inside the gut of bark beetles.
topic genome
detoxification
MDR transporters
α-pinene
transcriptome
bark beetles
url https://www.frontiersin.org/article/10.3389/fmicb.2019.02180/full
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