Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples

Due to the current pandemic, a global shortage of reagents has drawn interest in developing alternatives to increase the number of coronavirus tests. One such alternative is sample pooling. We compared commercial kits that are used in COVID-19 diagnostics in terms of their sensitivity and feasibilit...

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Main Authors: Vlad Petrovan, Virgil Vrajmasu, Ana Cristina Bucur, Dan Sebastian Soare, Eugen Radu, Paula Dimon, Mihaela Zaulet
Format: Article
Language:English
Published: MDPI AG 2020-07-01
Series:Diagnostics
Subjects:
PCR
Online Access:https://www.mdpi.com/2075-4418/10/7/472
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spelling doaj-3c24ed2f40a44c54b90b139746d964332020-11-25T03:23:37ZengMDPI AGDiagnostics2075-44182020-07-011047247210.3390/diagnostics10070472Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled SamplesVlad Petrovan0Virgil Vrajmasu1Ana Cristina Bucur2Dan Sebastian Soare3Eugen Radu4Paula Dimon5Mihaela Zaulet6The Pirbright Institute, Woking, Surrey GU24 0NF, UKVetWork Diagnostix, 820166 Tulcea, RomaniaEmergency Hospital Bucharest, Molecular Pathology Laboratory, 050098 Bucharest, RomaniaEmergency Hospital Bucharest, Molecular Pathology Laboratory, 050098 Bucharest, RomaniaEmergency Hospital Bucharest, Molecular Pathology Laboratory, 050098 Bucharest, RomaniaPersonal Genetics, 010987 Bucharest, RomaniaDepartment of Biochemistry and Molecular Biology, Faculty of Biology, University of Bucharest, 050095 Bucharest, RomaniaDue to the current pandemic, a global shortage of reagents has drawn interest in developing alternatives to increase the number of coronavirus tests. One such alternative is sample pooling. We compared commercial kits that are used in COVID-19 diagnostics in terms of their sensitivity and feasibility for use in pooling. In this preliminary study, we showed that pooling of up to 80 samples did not affect the efficacy of the kits. Additionally, the RNA-dependent RNA polymerase (RdRp) gene is a more suitable target in pooled samples than the envelope (E) gene. This approach could provide an easy method of screening a large number of samples and help adjust different governmental regulations.https://www.mdpi.com/2075-4418/10/7/472SARS-CoV-2PCRdiagnosticspooling strategy
collection DOAJ
language English
format Article
sources DOAJ
author Vlad Petrovan
Virgil Vrajmasu
Ana Cristina Bucur
Dan Sebastian Soare
Eugen Radu
Paula Dimon
Mihaela Zaulet
spellingShingle Vlad Petrovan
Virgil Vrajmasu
Ana Cristina Bucur
Dan Sebastian Soare
Eugen Radu
Paula Dimon
Mihaela Zaulet
Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples
Diagnostics
SARS-CoV-2
PCR
diagnostics
pooling strategy
author_facet Vlad Petrovan
Virgil Vrajmasu
Ana Cristina Bucur
Dan Sebastian Soare
Eugen Radu
Paula Dimon
Mihaela Zaulet
author_sort Vlad Petrovan
title Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples
title_short Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples
title_full Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples
title_fullStr Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples
title_full_unstemmed Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples
title_sort evaluation of commercial qpcr kits for detection of sars-cov-2 in pooled samples
publisher MDPI AG
series Diagnostics
issn 2075-4418
publishDate 2020-07-01
description Due to the current pandemic, a global shortage of reagents has drawn interest in developing alternatives to increase the number of coronavirus tests. One such alternative is sample pooling. We compared commercial kits that are used in COVID-19 diagnostics in terms of their sensitivity and feasibility for use in pooling. In this preliminary study, we showed that pooling of up to 80 samples did not affect the efficacy of the kits. Additionally, the RNA-dependent RNA polymerase (RdRp) gene is a more suitable target in pooled samples than the envelope (E) gene. This approach could provide an easy method of screening a large number of samples and help adjust different governmental regulations.
topic SARS-CoV-2
PCR
diagnostics
pooling strategy
url https://www.mdpi.com/2075-4418/10/7/472
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