Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples
Due to the current pandemic, a global shortage of reagents has drawn interest in developing alternatives to increase the number of coronavirus tests. One such alternative is sample pooling. We compared commercial kits that are used in COVID-19 diagnostics in terms of their sensitivity and feasibilit...
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doaj-3c24ed2f40a44c54b90b139746d964332020-11-25T03:23:37ZengMDPI AGDiagnostics2075-44182020-07-011047247210.3390/diagnostics10070472Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled SamplesVlad Petrovan0Virgil Vrajmasu1Ana Cristina Bucur2Dan Sebastian Soare3Eugen Radu4Paula Dimon5Mihaela Zaulet6The Pirbright Institute, Woking, Surrey GU24 0NF, UKVetWork Diagnostix, 820166 Tulcea, RomaniaEmergency Hospital Bucharest, Molecular Pathology Laboratory, 050098 Bucharest, RomaniaEmergency Hospital Bucharest, Molecular Pathology Laboratory, 050098 Bucharest, RomaniaEmergency Hospital Bucharest, Molecular Pathology Laboratory, 050098 Bucharest, RomaniaPersonal Genetics, 010987 Bucharest, RomaniaDepartment of Biochemistry and Molecular Biology, Faculty of Biology, University of Bucharest, 050095 Bucharest, RomaniaDue to the current pandemic, a global shortage of reagents has drawn interest in developing alternatives to increase the number of coronavirus tests. One such alternative is sample pooling. We compared commercial kits that are used in COVID-19 diagnostics in terms of their sensitivity and feasibility for use in pooling. In this preliminary study, we showed that pooling of up to 80 samples did not affect the efficacy of the kits. Additionally, the RNA-dependent RNA polymerase (RdRp) gene is a more suitable target in pooled samples than the envelope (E) gene. This approach could provide an easy method of screening a large number of samples and help adjust different governmental regulations.https://www.mdpi.com/2075-4418/10/7/472SARS-CoV-2PCRdiagnosticspooling strategy |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Vlad Petrovan Virgil Vrajmasu Ana Cristina Bucur Dan Sebastian Soare Eugen Radu Paula Dimon Mihaela Zaulet |
spellingShingle |
Vlad Petrovan Virgil Vrajmasu Ana Cristina Bucur Dan Sebastian Soare Eugen Radu Paula Dimon Mihaela Zaulet Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples Diagnostics SARS-CoV-2 PCR diagnostics pooling strategy |
author_facet |
Vlad Petrovan Virgil Vrajmasu Ana Cristina Bucur Dan Sebastian Soare Eugen Radu Paula Dimon Mihaela Zaulet |
author_sort |
Vlad Petrovan |
title |
Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples |
title_short |
Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples |
title_full |
Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples |
title_fullStr |
Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples |
title_full_unstemmed |
Evaluation of Commercial qPCR Kits for Detection of SARS-CoV-2 in Pooled Samples |
title_sort |
evaluation of commercial qpcr kits for detection of sars-cov-2 in pooled samples |
publisher |
MDPI AG |
series |
Diagnostics |
issn |
2075-4418 |
publishDate |
2020-07-01 |
description |
Due to the current pandemic, a global shortage of reagents has drawn interest in developing alternatives to increase the number of coronavirus tests. One such alternative is sample pooling. We compared commercial kits that are used in COVID-19 diagnostics in terms of their sensitivity and feasibility for use in pooling. In this preliminary study, we showed that pooling of up to 80 samples did not affect the efficacy of the kits. Additionally, the RNA-dependent RNA polymerase (RdRp) gene is a more suitable target in pooled samples than the envelope (E) gene. This approach could provide an easy method of screening a large number of samples and help adjust different governmental regulations. |
topic |
SARS-CoV-2 PCR diagnostics pooling strategy |
url |
https://www.mdpi.com/2075-4418/10/7/472 |
work_keys_str_mv |
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