Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA

Abstract Leveraging existing presence records and geospatial datasets, species distribution modeling has been widely applied to informing species conservation and restoration efforts. Maxent is one of the most popular modeling algorithms, yet recent research has demonstrated Maxent models are vulner...

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Main Authors: Andrew T. Taylor, Thomas Hafen, Colt T. Holley, Alin González, James M. Long
Format: Article
Language:English
Published: Wiley 2020-01-01
Series:Ecology and Evolution
Subjects:
Online Access:https://doi.org/10.1002/ece3.5913
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spelling doaj-3932f52abb9047f4a2bafdfcbdd426de2021-04-02T14:05:44ZengWileyEcology and Evolution2045-77582020-01-0110270571710.1002/ece3.5913Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USAAndrew T. Taylor0Thomas Hafen1Colt T. Holley2Alin González3James M. Long4Oklahoma Cooperative Fish and Wildlife Research Unit Department of Natural Resource Ecology and Management Oklahoma State University Stillwater OK USAOklahoma Cooperative Fish and Wildlife Research Unit Department of Natural Resource Ecology and Management Oklahoma State University Stillwater OK USAU.S. Geological Survey Fort Peck Project Office Columbia Environmental Research Center Fort Peck MT USAOklahoma Cooperative Fish and Wildlife Research Unit Department of Natural Resource Ecology and Management Oklahoma State University Stillwater OK USAU.S. Geological Survey Oklahoma Cooperative Fish and Wildlife Research Unit Department of Natural Resource Ecology and Management Oklahoma State University Stillwater OK USAAbstract Leveraging existing presence records and geospatial datasets, species distribution modeling has been widely applied to informing species conservation and restoration efforts. Maxent is one of the most popular modeling algorithms, yet recent research has demonstrated Maxent models are vulnerable to prediction errors related to spatial sampling bias and model complexity. Despite elevated rates of biodiversity imperilment in stream ecosystems, the application of Maxent models to stream networks has lagged, as has the availability of tools to address potential sources of error and calculate model evaluation metrics when modeling in nonraster environments (such as stream networks). Herein, we use Maxent and customized R code to estimate the potential distribution of paddlefish (Polyodon spathula) at a stream‐segment level within the Arkansas River basin, USA, while accounting for potential spatial sampling bias and model complexity. Filtering the presence data appeared to adequately remove an eastward, large‐river sampling bias that was evident within the unfiltered presence dataset. In particular, our novel riverscape filter provided a repeatable means of obtaining a relatively even coverage of presence data among watersheds and streams of varying sizes. The greatest differences in estimated distributions were observed among models constructed with default versus AICC‐selected parameterization. Although all models had similarly high performance and evaluation metrics, the AICC‐selected models were more inclusive of westward‐situated and smaller, headwater streams. Overall, our results solidified the importance of accounting for model complexity and spatial sampling bias in SDMs constructed within stream networks and provided a roadmap for future paddlefish restoration efforts in the study area.https://doi.org/10.1002/ece3.5913conservation biologyecological niche modelfisheries managementMaxentriverscape ecology
collection DOAJ
language English
format Article
sources DOAJ
author Andrew T. Taylor
Thomas Hafen
Colt T. Holley
Alin González
James M. Long
spellingShingle Andrew T. Taylor
Thomas Hafen
Colt T. Holley
Alin González
James M. Long
Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA
Ecology and Evolution
conservation biology
ecological niche model
fisheries management
Maxent
riverscape ecology
author_facet Andrew T. Taylor
Thomas Hafen
Colt T. Holley
Alin González
James M. Long
author_sort Andrew T. Taylor
title Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA
title_short Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA
title_full Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA
title_fullStr Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA
title_full_unstemmed Spatial sampling bias and model complexity in stream‐based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA
title_sort spatial sampling bias and model complexity in stream‐based species distribution models: a case study of paddlefish (polyodon spathula) in the arkansas river basin, usa
publisher Wiley
series Ecology and Evolution
issn 2045-7758
publishDate 2020-01-01
description Abstract Leveraging existing presence records and geospatial datasets, species distribution modeling has been widely applied to informing species conservation and restoration efforts. Maxent is one of the most popular modeling algorithms, yet recent research has demonstrated Maxent models are vulnerable to prediction errors related to spatial sampling bias and model complexity. Despite elevated rates of biodiversity imperilment in stream ecosystems, the application of Maxent models to stream networks has lagged, as has the availability of tools to address potential sources of error and calculate model evaluation metrics when modeling in nonraster environments (such as stream networks). Herein, we use Maxent and customized R code to estimate the potential distribution of paddlefish (Polyodon spathula) at a stream‐segment level within the Arkansas River basin, USA, while accounting for potential spatial sampling bias and model complexity. Filtering the presence data appeared to adequately remove an eastward, large‐river sampling bias that was evident within the unfiltered presence dataset. In particular, our novel riverscape filter provided a repeatable means of obtaining a relatively even coverage of presence data among watersheds and streams of varying sizes. The greatest differences in estimated distributions were observed among models constructed with default versus AICC‐selected parameterization. Although all models had similarly high performance and evaluation metrics, the AICC‐selected models were more inclusive of westward‐situated and smaller, headwater streams. Overall, our results solidified the importance of accounting for model complexity and spatial sampling bias in SDMs constructed within stream networks and provided a roadmap for future paddlefish restoration efforts in the study area.
topic conservation biology
ecological niche model
fisheries management
Maxent
riverscape ecology
url https://doi.org/10.1002/ece3.5913
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