Comparison of multiplex cytokine assays in a pediatric cohort with epilepsy
Background: Multiplex analyses allow for detection of dozens of cytokines/chemokines in small sample volumes. Although several commercially available assay kits are available, there are no comparative data in plasma measurements among pediatric or epilepsy cohorts. New method: Cohort study of 38 chi...
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2021-03-01
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doaj-388a6c910b5e4b78914d5b3e0d585ae62021-04-09T10:08:51ZengElsevierHeliyon2405-84402021-03-0173e06445Comparison of multiplex cytokine assays in a pediatric cohort with epilepsyAdam L. Numis0Christine H. Fox1Daniel J. Lowenstein2Philip J. Norris3Clara Di Germanio4University of California, San Francisco, Department of Neurology & Pediatrics, 675 Nelson Rising Lange, San Francisco, CA 94158 USA; Corresponding author.University of California, San Francisco, Department of Neurology & Pediatrics, 675 Nelson Rising Lange, San Francisco, CA 94158 USADepartment of Neurology, University of California, San Francisco USAVitalant Research Institute, 270 Masonic Avenue, San Francisco, CA 94118-4417 USA; Departments of Medicine and Laboratory Medicine, University of California, San Francisco, 533 Parnassus Avenue, San Francisco, CA 94143 USAVitalant Research Institute, 270 Masonic Avenue, San Francisco, CA 94118-4417 USABackground: Multiplex analyses allow for detection of dozens of cytokines/chemokines in small sample volumes. Although several commercially available assay kits are available, there are no comparative data in plasma measurements among pediatric or epilepsy cohorts. New method: Cohort study of 38 children with epilepsy. We evaluated plasma levels of cytokines/chemokines using three different assays: Luminex® xMAP high-sensitivity (HS) and standard-sensitivity (SS) assays, and Meso-Scale Discovery (MSD). We calculated recovery rates of each analyte, correlation coefficients between assays, and level of agreement between measurements. We repeated analyses in a subset of samples after a single freeze-thaw cycle. Results: Among ten analytes common to all assays, HS had high recovery (<15% of values extrapolated or out-of- range [OOR]) for all analytes, SS for 50%, and MSD for 40%. While several analytes had a high correlation between assays, Bland-Altman plots demonstrated assays were not interchangeable. For most analytes, a single freeze-thaw cycle decreased cytokines/chemokine measurements. There was good correlation of measurements after a freeze-thaw cycle with acceptable agreement between measurements for six of 13 (46%) analytes using HS, one of 9 (11%) for SS, and none for MSD. Comparison with existing methods: HS assays may optimize yield in plasma for proteins of particular interest in epilepsy research, limit values extrapolated beyond the standard curve, and improve precision compared to other SS and MSD assays. Conclusion: Our results demonstrate assay choice may be critical to study results and support the need for a standardized approach to biomarker assessment across epilepsy research and other domains.http://www.sciencedirect.com/science/article/pii/S2405844021005508Pediatric epilepsyCytokinesChemokinesLuminexMeso-scale discoveryNeuro-inflammation |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Adam L. Numis Christine H. Fox Daniel J. Lowenstein Philip J. Norris Clara Di Germanio |
spellingShingle |
Adam L. Numis Christine H. Fox Daniel J. Lowenstein Philip J. Norris Clara Di Germanio Comparison of multiplex cytokine assays in a pediatric cohort with epilepsy Heliyon Pediatric epilepsy Cytokines Chemokines Luminex Meso-scale discovery Neuro-inflammation |
author_facet |
Adam L. Numis Christine H. Fox Daniel J. Lowenstein Philip J. Norris Clara Di Germanio |
author_sort |
Adam L. Numis |
title |
Comparison of multiplex cytokine assays in a pediatric cohort with epilepsy |
title_short |
Comparison of multiplex cytokine assays in a pediatric cohort with epilepsy |
title_full |
Comparison of multiplex cytokine assays in a pediatric cohort with epilepsy |
title_fullStr |
Comparison of multiplex cytokine assays in a pediatric cohort with epilepsy |
title_full_unstemmed |
Comparison of multiplex cytokine assays in a pediatric cohort with epilepsy |
title_sort |
comparison of multiplex cytokine assays in a pediatric cohort with epilepsy |
publisher |
Elsevier |
series |
Heliyon |
issn |
2405-8440 |
publishDate |
2021-03-01 |
description |
Background: Multiplex analyses allow for detection of dozens of cytokines/chemokines in small sample volumes. Although several commercially available assay kits are available, there are no comparative data in plasma measurements among pediatric or epilepsy cohorts. New method: Cohort study of 38 children with epilepsy. We evaluated plasma levels of cytokines/chemokines using three different assays: Luminex® xMAP high-sensitivity (HS) and standard-sensitivity (SS) assays, and Meso-Scale Discovery (MSD). We calculated recovery rates of each analyte, correlation coefficients between assays, and level of agreement between measurements. We repeated analyses in a subset of samples after a single freeze-thaw cycle. Results: Among ten analytes common to all assays, HS had high recovery (<15% of values extrapolated or out-of- range [OOR]) for all analytes, SS for 50%, and MSD for 40%. While several analytes had a high correlation between assays, Bland-Altman plots demonstrated assays were not interchangeable. For most analytes, a single freeze-thaw cycle decreased cytokines/chemokine measurements. There was good correlation of measurements after a freeze-thaw cycle with acceptable agreement between measurements for six of 13 (46%) analytes using HS, one of 9 (11%) for SS, and none for MSD. Comparison with existing methods: HS assays may optimize yield in plasma for proteins of particular interest in epilepsy research, limit values extrapolated beyond the standard curve, and improve precision compared to other SS and MSD assays. Conclusion: Our results demonstrate assay choice may be critical to study results and support the need for a standardized approach to biomarker assessment across epilepsy research and other domains. |
topic |
Pediatric epilepsy Cytokines Chemokines Luminex Meso-scale discovery Neuro-inflammation |
url |
http://www.sciencedirect.com/science/article/pii/S2405844021005508 |
work_keys_str_mv |
AT adamlnumis comparisonofmultiplexcytokineassaysinapediatriccohortwithepilepsy AT christinehfox comparisonofmultiplexcytokineassaysinapediatriccohortwithepilepsy AT danieljlowenstein comparisonofmultiplexcytokineassaysinapediatriccohortwithepilepsy AT philipjnorris comparisonofmultiplexcytokineassaysinapediatriccohortwithepilepsy AT claradigermanio comparisonofmultiplexcytokineassaysinapediatriccohortwithepilepsy |
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