Genome sequence of <it>Desulfitobacterium hafniense </it>DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction

• Main Authors: Kim Sang-Hoon, Harzman Christina, Davis John K, Hutcheson Rachel, Broderick Joan B, Marsh Terence L, Tiedje James M
• Format: Article
• Language: English
• Published: BMC 2012-02-01
• Series: BMC Microbiology
• Online Access: http://www.biomedcentral.com/1471-2180/12/21

<p>Abstract</p> <p>Background</p> <p>The genome of the Gram-positive, metal-reducing, dehalorespiring <it>Desulfitobacterium hafniense </it>DCB-2 was sequenced in order to gain insights into its metabolic capacities, adaptive physiology, and regulatory machineries, and to compare with that of <it>Desulfitobacterium hafniense </it>Y51, the phylogenetically closest strain among the species with a sequenced genome.</p> <p>Results</p> <p>The genome of <it>Desulfitobacterium hafniense </it>DCB-2 is composed of a 5,279,134-bp circular chromosome with 5,042 predicted genes. Genome content and parallel physiological studies support the cell's ability to fix N₂and CO₂, form spores and biofilms, reduce metals, and use a variety of electron acceptors in respiration, including halogenated organic compounds. The genome contained seven reductive dehalogenase genes and four nitrogenase gene homologs but lacked the Nar respiratory nitrate reductase system. The <it>D. hafniense </it>DCB-2 genome contained genes for 43 RNA polymerase sigma factors including 27 sigma-24 subunits, 59 two-component signal transduction systems, and about 730 transporter proteins. In addition, it contained genes for 53 molybdopterin-binding oxidoreductases, 19 flavoprotein paralogs of the fumarate reductase, and many other FAD/FMN-binding oxidoreductases, proving the cell's versatility in both adaptive and reductive capacities. Together with the ability to form spores, the presence of the CO₂-fixing Wood-Ljungdahl pathway and the genes associated with oxygen tolerance add flexibility to the cell's options for survival under stress.</p> <p>Conclusions</p> <p><it>D. hafniense </it>DCB-2's genome contains genes consistent with its abilities for dehalogenation, metal reduction, N₂and CO₂fixation, anaerobic respiration, oxygen tolerance, spore formation, and biofilm formation which make this organism a potential candidate for bioremediation at contaminated sites.</p>