Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical Models

The current changing climate trend poses a threat to the productive efficacy and welfare of livestock across the globe. This review is an attempt to synthesize information pertaining to the applications of various genomic tools and statistical models that are available to identify climate-resilient...

Full description

Bibliographic Details
Main Authors: Mullakkalparambil Velayudhan Silpa, Sven König, Veerasamy Sejian, Pradeep Kumar Malik, Mini Ravi Reshma Nair, Vinicius F. C. Fonseca, Alex Sandro Campos Maia, Raghavendra Bhatta
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-04-01
Series:Frontiers in Veterinary Science
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fvets.2021.625189/full
id doaj-36676a828b0c490e87ad9899343fe596
record_format Article
spelling doaj-36676a828b0c490e87ad9899343fe5962021-04-29T10:56:09ZengFrontiers Media S.A.Frontiers in Veterinary Science2297-17692021-04-01810.3389/fvets.2021.625189625189Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical ModelsMullakkalparambil Velayudhan Silpa0Mullakkalparambil Velayudhan Silpa1Sven König2Veerasamy Sejian3Pradeep Kumar Malik4Mini Ravi Reshma Nair5Vinicius F. C. Fonseca6Vinicius F. C. Fonseca7Alex Sandro Campos Maia8Raghavendra Bhatta9Institute of Animal Breeding and Genetics, Justus-Liebig-Universität Gießen, Gießen, GermanyCenter for Climate Resilient Animal Adaptation Studies, Indian Council of Agricultural Research-National Institute of Animal Nutrition and Physiology, Bangalore, IndiaInstitute of Animal Breeding and Genetics, Justus-Liebig-Universität Gießen, Gießen, GermanyCenter for Climate Resilient Animal Adaptation Studies, Indian Council of Agricultural Research-National Institute of Animal Nutrition and Physiology, Bangalore, IndiaCenter for Climate Resilient Animal Adaptation Studies, Indian Council of Agricultural Research-National Institute of Animal Nutrition and Physiology, Bangalore, IndiaCenter for Climate Resilient Animal Adaptation Studies, Indian Council of Agricultural Research-National Institute of Animal Nutrition and Physiology, Bangalore, IndiaInnovation Group of Thermal Comfort and Animal Welfare (INOBIO-MANERA), Animal Science Department, Universidade Federal da Paraíba, Areia, BrazilBrain Function Research Group, Faculty of Health Sciences, School of Physiology, University of the Witwatersrand, Johannesburg, South AfricaInnovation Group of Thermal Comfort and Animal Welfare (INOBIO-MANERA), Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (Unesp), São Paulo, BrazilCenter for Climate Resilient Animal Adaptation Studies, Indian Council of Agricultural Research-National Institute of Animal Nutrition and Physiology, Bangalore, IndiaThe current changing climate trend poses a threat to the productive efficacy and welfare of livestock across the globe. This review is an attempt to synthesize information pertaining to the applications of various genomic tools and statistical models that are available to identify climate-resilient dairy cows. The different functional and economical traits which govern milk production play a significant role in determining the cost of milk production. Thus, identification of these traits may revolutionize the breeding programs to develop climate-resilient dairy cattle. Moreover, the genotype–environment interaction also influences the performance of dairy cattle especially during a challenging situation. The recent advancement in molecular biology has led to the development of a few biotechnological tools and statistical models like next-generation sequencing (NGS), microarray technology, whole transcriptome analysis, and genome-wide association studies (GWAS) which can be used to quantify the molecular mechanisms which govern the climate resilience capacity of dairy cows. Among these, the most preferred option for researchers around the globe was GWAS as this approach jointly takes into account all the genotype, phenotype, and pedigree information of farm animals. Furthermore, selection signatures can also help to demarcate functionally important regions in the genome which can be used to detect potential loci and candidate genes that have undergone positive selection in complex milk production traits of dairy cattle. These identified biomarkers can be incorporated in the existing breeding policies using genomic selection to develop climate-resilient dairy cattle.https://www.frontiersin.org/articles/10.3389/fvets.2021.625189/fulldairy (cows)heat stressmolecular markersthermoregulationgenome-wide association study
collection DOAJ
language English
format Article
sources DOAJ
author Mullakkalparambil Velayudhan Silpa
Mullakkalparambil Velayudhan Silpa
Sven König
Veerasamy Sejian
Pradeep Kumar Malik
Mini Ravi Reshma Nair
Vinicius F. C. Fonseca
Vinicius F. C. Fonseca
Alex Sandro Campos Maia
Raghavendra Bhatta
spellingShingle Mullakkalparambil Velayudhan Silpa
Mullakkalparambil Velayudhan Silpa
Sven König
Veerasamy Sejian
Pradeep Kumar Malik
Mini Ravi Reshma Nair
Vinicius F. C. Fonseca
Vinicius F. C. Fonseca
Alex Sandro Campos Maia
Raghavendra Bhatta
Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical Models
Frontiers in Veterinary Science
dairy (cows)
heat stress
molecular markers
thermoregulation
genome-wide association study
author_facet Mullakkalparambil Velayudhan Silpa
Mullakkalparambil Velayudhan Silpa
Sven König
Veerasamy Sejian
Pradeep Kumar Malik
Mini Ravi Reshma Nair
Vinicius F. C. Fonseca
Vinicius F. C. Fonseca
Alex Sandro Campos Maia
Raghavendra Bhatta
author_sort Mullakkalparambil Velayudhan Silpa
title Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical Models
title_short Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical Models
title_full Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical Models
title_fullStr Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical Models
title_full_unstemmed Climate-Resilient Dairy Cattle Production: Applications of Genomic Tools and Statistical Models
title_sort climate-resilient dairy cattle production: applications of genomic tools and statistical models
publisher Frontiers Media S.A.
series Frontiers in Veterinary Science
issn 2297-1769
publishDate 2021-04-01
description The current changing climate trend poses a threat to the productive efficacy and welfare of livestock across the globe. This review is an attempt to synthesize information pertaining to the applications of various genomic tools and statistical models that are available to identify climate-resilient dairy cows. The different functional and economical traits which govern milk production play a significant role in determining the cost of milk production. Thus, identification of these traits may revolutionize the breeding programs to develop climate-resilient dairy cattle. Moreover, the genotype–environment interaction also influences the performance of dairy cattle especially during a challenging situation. The recent advancement in molecular biology has led to the development of a few biotechnological tools and statistical models like next-generation sequencing (NGS), microarray technology, whole transcriptome analysis, and genome-wide association studies (GWAS) which can be used to quantify the molecular mechanisms which govern the climate resilience capacity of dairy cows. Among these, the most preferred option for researchers around the globe was GWAS as this approach jointly takes into account all the genotype, phenotype, and pedigree information of farm animals. Furthermore, selection signatures can also help to demarcate functionally important regions in the genome which can be used to detect potential loci and candidate genes that have undergone positive selection in complex milk production traits of dairy cattle. These identified biomarkers can be incorporated in the existing breeding policies using genomic selection to develop climate-resilient dairy cattle.
topic dairy (cows)
heat stress
molecular markers
thermoregulation
genome-wide association study
url https://www.frontiersin.org/articles/10.3389/fvets.2021.625189/full
work_keys_str_mv AT mullakkalparambilvelayudhansilpa climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT mullakkalparambilvelayudhansilpa climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT svenkonig climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT veerasamysejian climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT pradeepkumarmalik climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT miniravireshmanair climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT viniciusfcfonseca climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT viniciusfcfonseca climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT alexsandrocamposmaia climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
AT raghavendrabhatta climateresilientdairycattleproductionapplicationsofgenomictoolsandstatisticalmodels
_version_ 1721501260783288320