Immune-Related Gene Expression Analysis Revealed Three lncRNAs as Prognostic Factors for Colon Cancer

Colorectal cancer (CRC) is one of the most common cancers. Almost 80% of CRC cases are colon adenocarcinomas (COADs). Several studies have indicated the role of immunotherapy in the treatment of various cancers. Our study aimed to identify immune-related long non-coding RNAs (lncRNAs) and to use the...

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Main Authors: Xiao-Liang Xing, Ti Zhang, Zhi-Yong Yao, Chaoqun Xing, Chunxiao Wang, Yuan-Wu Liu, Minjiang Huang
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-07-01
Series:Frontiers in Genetics
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fgene.2021.690053/full
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spelling doaj-35274b892efc456591c5e573426470c62021-07-09T09:16:39ZengFrontiers Media S.A.Frontiers in Genetics1664-80212021-07-011210.3389/fgene.2021.690053690053Immune-Related Gene Expression Analysis Revealed Three lncRNAs as Prognostic Factors for Colon CancerXiao-Liang Xing0Ti Zhang1Zhi-Yong Yao2Chaoqun Xing3Chunxiao Wang4Yuan-Wu Liu5Minjiang Huang6School of Public Health and Laboratory Medicine, Hunan University of Medicine, Huaihua, ChinaSchool of Public Health and Laboratory Medicine, Hunan University of Medicine, Huaihua, ChinaSchool of Public Health and Laboratory Medicine, Hunan University of Medicine, Huaihua, ChinaSchool of Public Health and Laboratory Medicine, Hunan University of Medicine, Huaihua, ChinaSchool of Public Health and Laboratory Medicine, Hunan University of Medicine, Huaihua, ChinaBeijing Advanced Innovation Center for Food Nutrition and Human Health, China Agricultural University, Beijing, ChinaSchool of Public Health and Laboratory Medicine, Hunan University of Medicine, Huaihua, ChinaColorectal cancer (CRC) is one of the most common cancers. Almost 80% of CRC cases are colon adenocarcinomas (COADs). Several studies have indicated the role of immunotherapy in the treatment of various cancers. Our study aimed to identify immune-related long non-coding RNAs (lncRNAs) and to use them to construct a risk assessment model for evaluating COAD prognosis. Using differential expression, correlation, and Cox regression analyses, we identified three immune-related differentially expressed lncRNAs (IR-DELs) and used them to construct a risk assessment model. The area under the curve (AUC) for each receiver operating characteristic (ROC) curve at 3-, 5-, and 10-years were greater than 0.6. In addition, the risk assessment model was correlated with several immune cells and factors. The three IR-DELs (AC124067.4, LINC02604, and MIR4435-2HG) identified in this study can be used to predict outcomes for patients with COAD and might help in identifying those who can benefit from anti-tumor immunotherapy.https://www.frontiersin.org/articles/10.3389/fgene.2021.690053/fullCOADimmunelncRNAsoverall survivalrisk model
collection DOAJ
language English
format Article
sources DOAJ
author Xiao-Liang Xing
Ti Zhang
Zhi-Yong Yao
Chaoqun Xing
Chunxiao Wang
Yuan-Wu Liu
Minjiang Huang
spellingShingle Xiao-Liang Xing
Ti Zhang
Zhi-Yong Yao
Chaoqun Xing
Chunxiao Wang
Yuan-Wu Liu
Minjiang Huang
Immune-Related Gene Expression Analysis Revealed Three lncRNAs as Prognostic Factors for Colon Cancer
Frontiers in Genetics
COAD
immune
lncRNAs
overall survival
risk model
author_facet Xiao-Liang Xing
Ti Zhang
Zhi-Yong Yao
Chaoqun Xing
Chunxiao Wang
Yuan-Wu Liu
Minjiang Huang
author_sort Xiao-Liang Xing
title Immune-Related Gene Expression Analysis Revealed Three lncRNAs as Prognostic Factors for Colon Cancer
title_short Immune-Related Gene Expression Analysis Revealed Three lncRNAs as Prognostic Factors for Colon Cancer
title_full Immune-Related Gene Expression Analysis Revealed Three lncRNAs as Prognostic Factors for Colon Cancer
title_fullStr Immune-Related Gene Expression Analysis Revealed Three lncRNAs as Prognostic Factors for Colon Cancer
title_full_unstemmed Immune-Related Gene Expression Analysis Revealed Three lncRNAs as Prognostic Factors for Colon Cancer
title_sort immune-related gene expression analysis revealed three lncrnas as prognostic factors for colon cancer
publisher Frontiers Media S.A.
series Frontiers in Genetics
issn 1664-8021
publishDate 2021-07-01
description Colorectal cancer (CRC) is one of the most common cancers. Almost 80% of CRC cases are colon adenocarcinomas (COADs). Several studies have indicated the role of immunotherapy in the treatment of various cancers. Our study aimed to identify immune-related long non-coding RNAs (lncRNAs) and to use them to construct a risk assessment model for evaluating COAD prognosis. Using differential expression, correlation, and Cox regression analyses, we identified three immune-related differentially expressed lncRNAs (IR-DELs) and used them to construct a risk assessment model. The area under the curve (AUC) for each receiver operating characteristic (ROC) curve at 3-, 5-, and 10-years were greater than 0.6. In addition, the risk assessment model was correlated with several immune cells and factors. The three IR-DELs (AC124067.4, LINC02604, and MIR4435-2HG) identified in this study can be used to predict outcomes for patients with COAD and might help in identifying those who can benefit from anti-tumor immunotherapy.
topic COAD
immune
lncRNAs
overall survival
risk model
url https://www.frontiersin.org/articles/10.3389/fgene.2021.690053/full
work_keys_str_mv AT xiaoliangxing immunerelatedgeneexpressionanalysisrevealedthreelncrnasasprognosticfactorsforcoloncancer
AT tizhang immunerelatedgeneexpressionanalysisrevealedthreelncrnasasprognosticfactorsforcoloncancer
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AT chaoqunxing immunerelatedgeneexpressionanalysisrevealedthreelncrnasasprognosticfactorsforcoloncancer
AT chunxiaowang immunerelatedgeneexpressionanalysisrevealedthreelncrnasasprognosticfactorsforcoloncancer
AT yuanwuliu immunerelatedgeneexpressionanalysisrevealedthreelncrnasasprognosticfactorsforcoloncancer
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