DNA Footprints: Using Parasites to Detect Elusive Animals, Proof of Principle in Hedgehogs

• Main Authors: Simon Allen, Carolyn Greig, Ben Rowson, Robin B. Gasser, Abdul Jabbar, Simone Morelli, Eric R. Morgan, Martyn Wood, Dan Forman
• Format: Article
• Language: English
• Published: MDPI AG 2020-08-01
• Series: Animals
• Subjects: Hedgehog; PCR; <i>Crenosoma striatum</i>; rDNA; Gastropod; Nematode
• Online Access: https://www.mdpi.com/2076-2615/10/8/1420

The Western European Hedgehog (<i>Erinaceous europaeus</i>) is a nocturnal animal that is in decline in much of Europe, but the monitoring of this species is subjective, prone to error, and an inadequate basis for estimating population trends. Here, we report the use of <i>Crenosoma striatum</i>, a parasitic nematode specific to hedgehogs as definitive hosts, to detect hedgehog presence in the natural environment. This is achieved through collecting and sampling the parasites within their intermediate hosts, gastropoda, a group much simpler to locate and sample in both urban and rural habitats. <i>C. striatum</i> and <i>Crenosoma vulpis</i> were collected post-mortem from the lungs of hedgehogs and foxes, respectively. Slugs were collected in two sessions, during spring and autumn, from Skomer Island (<i>n</i> = 21), which is known to be free of hedgehogs (and foxes); and Pennard, Swansea (<i>n</i> = 42), known to have a healthy hedgehog population. The second internal transcribed spacer of parasite ribosomal DNA was used to develop a highly specific, novel, PCR based multiplex assay. <i>Crenosoma striatum</i> was found only at the site known to be inhabited by hedgehogs, at an average prevalence in gastropods of 10% in spring and autumn. The molecular test was highly specific: One mollusc was positive for both <i>C. striatum</i> and <i>C. vulpis</i>, and differentiation between the two nematode species was clear. This study demonstrates proof of principle for using detection of specific parasite DNA in easily sampled intermediate hosts to confirm the presence of an elusive nocturnal definitive host species. The approach has great potential as an adaptable, objective tool to supplement and support existing ecological survey methods.