NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data

NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data

We introduce NSeq, a fast and efficient Java application for finding positioned nucleosomes from the high-throughput sequencing of MNase-digested mononucleosomal DNA. NSeq includes a user-friendly graphical interface, computes false discovery rates for candidate nucleosomes from Monte Carlo simulati...

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Bibliographic Details
Main Authors: Abhinav eNellore, Konstantin eBobkov, Elizabeth eHowe, Aleksandr ePankov, Aaron eDiaz, Jun S Song
Format: Article
Language:English
Published: Frontiers Media S.A. 2013-01-01
Series:Frontiers in Genetics
Subjects:
Nucleosomes
Software
nucleosome positioning
NGS data analysis
graphical user interface
Online Access:http://journal.frontiersin.org/Journal/10.3389/fgene.2012.00320/full

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