Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
Abstract Data privacy mechanisms are essential for rapidly scaling medical training databases to capture the heterogeneity of patient data distributions toward robust and generalizable machine learning systems. In the current COVID-19 pandemic, a major focus of artificial intelligence (AI) is interp...
Main Authors: | , , , , , , , , , , , , , , , , , , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
Nature Publishing Group
2021-03-01
|
Series: | npj Digital Medicine |
Online Access: | https://doi.org/10.1038/s41746-021-00431-6 |
id |
doaj-340f463aed8748e1b87b2603e67e7d80 |
---|---|
record_format |
Article |
spelling |
doaj-340f463aed8748e1b87b2603e67e7d802021-04-04T11:38:55ZengNature Publishing Groupnpj Digital Medicine2398-63522021-03-014111110.1038/s41746-021-00431-6Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation studyQi Dou0Tiffany Y. So1Meirui Jiang2Quande Liu3Varut Vardhanabhuti4Georgios Kaissis5Zeju Li6Weixin Si7Heather H. C. Lee8Kevin Yu9Zuxin Feng10Li Dong11Egon Burian12Friederike Jungmann13Rickmer Braren14Marcus Makowski15Bernhard Kainz16Daniel Rueckert17Ben Glocker18Simon C. H. Yu19Pheng Ann Heng20Department of Computer Science and Engineering, The Chinese University of Hong KongDepartment of Imaging and Interventional Radiology, The Chinese University of Hong KongDepartment of Computer Science and Engineering, The Chinese University of Hong KongDepartment of Computer Science and Engineering, The Chinese University of Hong KongDepartment of Diagnostic Radiology, Li Ka Shing Faculty of Medicine, The University of Hong KongBiomedical Image Analysis Group, Imperial College LondonBiomedical Image Analysis Group, Imperial College LondonShenzhen Institutes of Advanced Technology, Chinese Academy of SciencesDepartment of Diagnostic Radiology, Princess Margaret HospitalDepartment of Radiology, Tuen Muen HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalDepartment of Radiology, Zhijiang People’s HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalBiomedical Image Analysis Group, Imperial College LondonBiomedical Image Analysis Group, Imperial College LondonBiomedical Image Analysis Group, Imperial College LondonDepartment of Imaging and Interventional Radiology, The Chinese University of Hong KongDepartment of Computer Science and Engineering, The Chinese University of Hong KongAbstract Data privacy mechanisms are essential for rapidly scaling medical training databases to capture the heterogeneity of patient data distributions toward robust and generalizable machine learning systems. In the current COVID-19 pandemic, a major focus of artificial intelligence (AI) is interpreting chest CT, which can be readily used in the assessment and management of the disease. This paper demonstrates the feasibility of a federated learning method for detecting COVID-19 related CT abnormalities with external validation on patients from a multinational study. We recruited 132 patients from seven multinational different centers, with three internal hospitals from Hong Kong for training and testing, and four external, independent datasets from Mainland China and Germany, for validating model generalizability. We also conducted case studies on longitudinal scans for automated estimation of lesion burden for hospitalized COVID-19 patients. We explore the federated learning algorithms to develop a privacy-preserving AI model for COVID-19 medical image diagnosis with good generalization capability on unseen multinational datasets. Federated learning could provide an effective mechanism during pandemics to rapidly develop clinically useful AI across institutions and countries overcoming the burden of central aggregation of large amounts of sensitive data.https://doi.org/10.1038/s41746-021-00431-6 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Qi Dou Tiffany Y. So Meirui Jiang Quande Liu Varut Vardhanabhuti Georgios Kaissis Zeju Li Weixin Si Heather H. C. Lee Kevin Yu Zuxin Feng Li Dong Egon Burian Friederike Jungmann Rickmer Braren Marcus Makowski Bernhard Kainz Daniel Rueckert Ben Glocker Simon C. H. Yu Pheng Ann Heng |
spellingShingle |
Qi Dou Tiffany Y. So Meirui Jiang Quande Liu Varut Vardhanabhuti Georgios Kaissis Zeju Li Weixin Si Heather H. C. Lee Kevin Yu Zuxin Feng Li Dong Egon Burian Friederike Jungmann Rickmer Braren Marcus Makowski Bernhard Kainz Daniel Rueckert Ben Glocker Simon C. H. Yu Pheng Ann Heng Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study npj Digital Medicine |
author_facet |
Qi Dou Tiffany Y. So Meirui Jiang Quande Liu Varut Vardhanabhuti Georgios Kaissis Zeju Li Weixin Si Heather H. C. Lee Kevin Yu Zuxin Feng Li Dong Egon Burian Friederike Jungmann Rickmer Braren Marcus Makowski Bernhard Kainz Daniel Rueckert Ben Glocker Simon C. H. Yu Pheng Ann Heng |
author_sort |
Qi Dou |
title |
Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study |
title_short |
Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study |
title_full |
Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study |
title_fullStr |
Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study |
title_full_unstemmed |
Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study |
title_sort |
federated deep learning for detecting covid-19 lung abnormalities in ct: a privacy-preserving multinational validation study |
publisher |
Nature Publishing Group |
series |
npj Digital Medicine |
issn |
2398-6352 |
publishDate |
2021-03-01 |
description |
Abstract Data privacy mechanisms are essential for rapidly scaling medical training databases to capture the heterogeneity of patient data distributions toward robust and generalizable machine learning systems. In the current COVID-19 pandemic, a major focus of artificial intelligence (AI) is interpreting chest CT, which can be readily used in the assessment and management of the disease. This paper demonstrates the feasibility of a federated learning method for detecting COVID-19 related CT abnormalities with external validation on patients from a multinational study. We recruited 132 patients from seven multinational different centers, with three internal hospitals from Hong Kong for training and testing, and four external, independent datasets from Mainland China and Germany, for validating model generalizability. We also conducted case studies on longitudinal scans for automated estimation of lesion burden for hospitalized COVID-19 patients. We explore the federated learning algorithms to develop a privacy-preserving AI model for COVID-19 medical image diagnosis with good generalization capability on unseen multinational datasets. Federated learning could provide an effective mechanism during pandemics to rapidly develop clinically useful AI across institutions and countries overcoming the burden of central aggregation of large amounts of sensitive data. |
url |
https://doi.org/10.1038/s41746-021-00431-6 |
work_keys_str_mv |
AT qidou federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT tiffanyyso federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT meiruijiang federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT quandeliu federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT varutvardhanabhuti federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT georgioskaissis federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT zejuli federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT weixinsi federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT heatherhclee federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT kevinyu federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT zuxinfeng federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT lidong federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT egonburian federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT friederikejungmann federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT rickmerbraren federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT marcusmakowski federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT bernhardkainz federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT danielrueckert federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT benglocker federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT simonchyu federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy AT phengannheng federateddeeplearningfordetectingcovid19lungabnormalitiesinctaprivacypreservingmultinationalvalidationstudy |
_version_ |
1724164135633027072 |