Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study

Abstract Data privacy mechanisms are essential for rapidly scaling medical training databases to capture the heterogeneity of patient data distributions toward robust and generalizable machine learning systems. In the current COVID-19 pandemic, a major focus of artificial intelligence (AI) is interp...

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Main Authors: Qi Dou, Tiffany Y. So, Meirui Jiang, Quande Liu, Varut Vardhanabhuti, Georgios Kaissis, Zeju Li, Weixin Si, Heather H. C. Lee, Kevin Yu, Zuxin Feng, Li Dong, Egon Burian, Friederike Jungmann, Rickmer Braren, Marcus Makowski, Bernhard Kainz, Daniel Rueckert, Ben Glocker, Simon C. H. Yu, Pheng Ann Heng
Format: Article
Language:English
Published: Nature Publishing Group 2021-03-01
Series:npj Digital Medicine
Online Access:https://doi.org/10.1038/s41746-021-00431-6
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spelling doaj-340f463aed8748e1b87b2603e67e7d802021-04-04T11:38:55ZengNature Publishing Groupnpj Digital Medicine2398-63522021-03-014111110.1038/s41746-021-00431-6Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation studyQi Dou0Tiffany Y. So1Meirui Jiang2Quande Liu3Varut Vardhanabhuti4Georgios Kaissis5Zeju Li6Weixin Si7Heather H. C. Lee8Kevin Yu9Zuxin Feng10Li Dong11Egon Burian12Friederike Jungmann13Rickmer Braren14Marcus Makowski15Bernhard Kainz16Daniel Rueckert17Ben Glocker18Simon C. H. Yu19Pheng Ann Heng20Department of Computer Science and Engineering, The Chinese University of Hong KongDepartment of Imaging and Interventional Radiology, The Chinese University of Hong KongDepartment of Computer Science and Engineering, The Chinese University of Hong KongDepartment of Computer Science and Engineering, The Chinese University of Hong KongDepartment of Diagnostic Radiology, Li Ka Shing Faculty of Medicine, The University of Hong KongBiomedical Image Analysis Group, Imperial College LondonBiomedical Image Analysis Group, Imperial College LondonShenzhen Institutes of Advanced Technology, Chinese Academy of SciencesDepartment of Diagnostic Radiology, Princess Margaret HospitalDepartment of Radiology, Tuen Muen HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalDepartment of Radiology, Zhijiang People’s HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalDepartment of Emergency Medicine, Peking University ShenZhen HospitalBiomedical Image Analysis Group, Imperial College LondonBiomedical Image Analysis Group, Imperial College LondonBiomedical Image Analysis Group, Imperial College LondonDepartment of Imaging and Interventional Radiology, The Chinese University of Hong KongDepartment of Computer Science and Engineering, The Chinese University of Hong KongAbstract Data privacy mechanisms are essential for rapidly scaling medical training databases to capture the heterogeneity of patient data distributions toward robust and generalizable machine learning systems. In the current COVID-19 pandemic, a major focus of artificial intelligence (AI) is interpreting chest CT, which can be readily used in the assessment and management of the disease. This paper demonstrates the feasibility of a federated learning method for detecting COVID-19 related CT abnormalities with external validation on patients from a multinational study. We recruited 132 patients from seven multinational different centers, with three internal hospitals from Hong Kong for training and testing, and four external, independent datasets from Mainland China and Germany, for validating model generalizability. We also conducted case studies on longitudinal scans for automated estimation of lesion burden for hospitalized COVID-19 patients. We explore the federated learning algorithms to develop a privacy-preserving AI model for COVID-19 medical image diagnosis with good generalization capability on unseen multinational datasets. Federated learning could provide an effective mechanism during pandemics to rapidly develop clinically useful AI across institutions and countries overcoming the burden of central aggregation of large amounts of sensitive data.https://doi.org/10.1038/s41746-021-00431-6
collection DOAJ
language English
format Article
sources DOAJ
author Qi Dou
Tiffany Y. So
Meirui Jiang
Quande Liu
Varut Vardhanabhuti
Georgios Kaissis
Zeju Li
Weixin Si
Heather H. C. Lee
Kevin Yu
Zuxin Feng
Li Dong
Egon Burian
Friederike Jungmann
Rickmer Braren
Marcus Makowski
Bernhard Kainz
Daniel Rueckert
Ben Glocker
Simon C. H. Yu
Pheng Ann Heng
spellingShingle Qi Dou
Tiffany Y. So
Meirui Jiang
Quande Liu
Varut Vardhanabhuti
Georgios Kaissis
Zeju Li
Weixin Si
Heather H. C. Lee
Kevin Yu
Zuxin Feng
Li Dong
Egon Burian
Friederike Jungmann
Rickmer Braren
Marcus Makowski
Bernhard Kainz
Daniel Rueckert
Ben Glocker
Simon C. H. Yu
Pheng Ann Heng
Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
npj Digital Medicine
author_facet Qi Dou
Tiffany Y. So
Meirui Jiang
Quande Liu
Varut Vardhanabhuti
Georgios Kaissis
Zeju Li
Weixin Si
Heather H. C. Lee
Kevin Yu
Zuxin Feng
Li Dong
Egon Burian
Friederike Jungmann
Rickmer Braren
Marcus Makowski
Bernhard Kainz
Daniel Rueckert
Ben Glocker
Simon C. H. Yu
Pheng Ann Heng
author_sort Qi Dou
title Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
title_short Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
title_full Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
title_fullStr Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
title_full_unstemmed Federated deep learning for detecting COVID-19 lung abnormalities in CT: a privacy-preserving multinational validation study
title_sort federated deep learning for detecting covid-19 lung abnormalities in ct: a privacy-preserving multinational validation study
publisher Nature Publishing Group
series npj Digital Medicine
issn 2398-6352
publishDate 2021-03-01
description Abstract Data privacy mechanisms are essential for rapidly scaling medical training databases to capture the heterogeneity of patient data distributions toward robust and generalizable machine learning systems. In the current COVID-19 pandemic, a major focus of artificial intelligence (AI) is interpreting chest CT, which can be readily used in the assessment and management of the disease. This paper demonstrates the feasibility of a federated learning method for detecting COVID-19 related CT abnormalities with external validation on patients from a multinational study. We recruited 132 patients from seven multinational different centers, with three internal hospitals from Hong Kong for training and testing, and four external, independent datasets from Mainland China and Germany, for validating model generalizability. We also conducted case studies on longitudinal scans for automated estimation of lesion burden for hospitalized COVID-19 patients. We explore the federated learning algorithms to develop a privacy-preserving AI model for COVID-19 medical image diagnosis with good generalization capability on unseen multinational datasets. Federated learning could provide an effective mechanism during pandemics to rapidly develop clinically useful AI across institutions and countries overcoming the burden of central aggregation of large amounts of sensitive data.
url https://doi.org/10.1038/s41746-021-00431-6
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