MicroRNA-424 regulates cisplatin resistance of gastric cancer by targeting SMURF1 based on GEO database and primary validation in human gastric cancer tissues

Li Lu,1 Menglin Wu,2 Yaoheng Lu,1 Zhicheng Zhao,1 Tong Liu,1 Weihua Fu,1 Weidong Li1 1Department of General Surgery, Tianjin Medical University General Hospital, Tianjin, People’s Republic of China; 2Radiology Department, Second Hospital of Tianjin Medical University, Tianjin, People&r...

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Main Authors: Lu L, Wu M, Lu Y, Zhao Z, Liu T, Fu W, Li W
Format: Article
Language:English
Published: Dove Medical Press 2019-09-01
Series:OncoTargets and Therapy
Subjects:
Online Access:https://www.dovepress.com/microrna-424-regulates-cisplatin-resistance-of-gastric-cancer-by-targe-peer-reviewed-article-OTT
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spelling doaj-332a7daa4dad4525b9917f21056f17f32020-11-25T01:36:27ZengDove Medical PressOncoTargets and Therapy1178-69302019-09-01Volume 127623763648626MicroRNA-424 regulates cisplatin resistance of gastric cancer by targeting SMURF1 based on GEO database and primary validation in human gastric cancer tissuesLu LWu MLu YZhao ZLiu TFu WLi WLi Lu,1 Menglin Wu,2 Yaoheng Lu,1 Zhicheng Zhao,1 Tong Liu,1 Weihua Fu,1 Weidong Li1 1Department of General Surgery, Tianjin Medical University General Hospital, Tianjin, People’s Republic of China; 2Radiology Department, Second Hospital of Tianjin Medical University, Tianjin, People’s Republic of ChinaCorrespondence: Weidong LiDepartment of General Surgery, Tianjin Medical University General Hospital, No.154, Anshan Road, Heping District, Tianjin, People’s Republic of ChinaTel +86 226 036 3901Fax +86 226 036 3901Email tjmughgs_lwd@163.comPurpose: Cisplatin (DDP) based chemotherapy regimens are widely used in advanced gastric cancer (GC). Drug resistance often limited the clinical benefits of cisplatin regimen. The mechanisms of cisplatin resistance have not been fully revealed. Therefore, further exploration of the relevant molecular mechanisms is urgently needed.Patients and methods: DDP resistance associated miRNA of GC microarray dataset GSE86195 was obtained from the National Center for Biotechnology Information (NCBI) GEO database, GEO2R was applied to compare the samples in two different groups under the same experimental conditions. |log2(Fold Change) | (log2(FC)) was selected as the criteria to screen the statistically significant DE-miRNAs. StarBaseV3.0 was used to predict the target genes of the DE-miRNAs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses of target genes of DE-miRNAs were carried out using DAVID. The STRING database was applied to estimate the correlations between target genes. Analysis of hubgenes by coremine and The Human Protein Atlas (THPA). Initial expression validations of miR-424 and miR-491-5p, SMURF1 and BCL2L1 were carried out using clinical pathological specimens by RT-PCR.Results: A total of 13 Differential expression-miRNAs (DE-miRNAs) were identified in DDP chemoresistant cells, including 9 upregulated miRNAs and 4 downregulated miRNAs. SMURF1 and BCL2L1 were screened as the critical genes in DDP-resistant GC, which were regulated by miR-424 and miR-491-5p respectively. The results of validation of hub genes expression in GC tissues indicated that in DFS<1-year group, the expression of miR-424 decreased significantly, notably upregulated expression of SMURF1 was also detected.Conclusion: Our results implied that miR-424, as a tumor suppressor, could deregulate SMURF1 in DDP-resistant GC cells.Keywords: gastric cancer, cisplatin drug resistance, miRNAshttps://www.dovepress.com/microrna-424-regulates-cisplatin-resistance-of-gastric-cancer-by-targe-peer-reviewed-article-OTTGastric cancerCisplatinDrug resistancemiRNAs
collection DOAJ
language English
format Article
sources DOAJ
author Lu L
Wu M
Lu Y
Zhao Z
Liu T
Fu W
Li W
spellingShingle Lu L
Wu M
Lu Y
Zhao Z
Liu T
Fu W
Li W
MicroRNA-424 regulates cisplatin resistance of gastric cancer by targeting SMURF1 based on GEO database and primary validation in human gastric cancer tissues
OncoTargets and Therapy
Gastric cancer
Cisplatin
Drug resistance
miRNAs
author_facet Lu L
Wu M
Lu Y
Zhao Z
Liu T
Fu W
Li W
author_sort Lu L
title MicroRNA-424 regulates cisplatin resistance of gastric cancer by targeting SMURF1 based on GEO database and primary validation in human gastric cancer tissues
title_short MicroRNA-424 regulates cisplatin resistance of gastric cancer by targeting SMURF1 based on GEO database and primary validation in human gastric cancer tissues
title_full MicroRNA-424 regulates cisplatin resistance of gastric cancer by targeting SMURF1 based on GEO database and primary validation in human gastric cancer tissues
title_fullStr MicroRNA-424 regulates cisplatin resistance of gastric cancer by targeting SMURF1 based on GEO database and primary validation in human gastric cancer tissues
title_full_unstemmed MicroRNA-424 regulates cisplatin resistance of gastric cancer by targeting SMURF1 based on GEO database and primary validation in human gastric cancer tissues
title_sort microrna-424 regulates cisplatin resistance of gastric cancer by targeting smurf1 based on geo database and primary validation in human gastric cancer tissues
publisher Dove Medical Press
series OncoTargets and Therapy
issn 1178-6930
publishDate 2019-09-01
description Li Lu,1 Menglin Wu,2 Yaoheng Lu,1 Zhicheng Zhao,1 Tong Liu,1 Weihua Fu,1 Weidong Li1 1Department of General Surgery, Tianjin Medical University General Hospital, Tianjin, People’s Republic of China; 2Radiology Department, Second Hospital of Tianjin Medical University, Tianjin, People’s Republic of ChinaCorrespondence: Weidong LiDepartment of General Surgery, Tianjin Medical University General Hospital, No.154, Anshan Road, Heping District, Tianjin, People’s Republic of ChinaTel +86 226 036 3901Fax +86 226 036 3901Email tjmughgs_lwd@163.comPurpose: Cisplatin (DDP) based chemotherapy regimens are widely used in advanced gastric cancer (GC). Drug resistance often limited the clinical benefits of cisplatin regimen. The mechanisms of cisplatin resistance have not been fully revealed. Therefore, further exploration of the relevant molecular mechanisms is urgently needed.Patients and methods: DDP resistance associated miRNA of GC microarray dataset GSE86195 was obtained from the National Center for Biotechnology Information (NCBI) GEO database, GEO2R was applied to compare the samples in two different groups under the same experimental conditions. |log2(Fold Change) | (log2(FC)) was selected as the criteria to screen the statistically significant DE-miRNAs. StarBaseV3.0 was used to predict the target genes of the DE-miRNAs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses of target genes of DE-miRNAs were carried out using DAVID. The STRING database was applied to estimate the correlations between target genes. Analysis of hubgenes by coremine and The Human Protein Atlas (THPA). Initial expression validations of miR-424 and miR-491-5p, SMURF1 and BCL2L1 were carried out using clinical pathological specimens by RT-PCR.Results: A total of 13 Differential expression-miRNAs (DE-miRNAs) were identified in DDP chemoresistant cells, including 9 upregulated miRNAs and 4 downregulated miRNAs. SMURF1 and BCL2L1 were screened as the critical genes in DDP-resistant GC, which were regulated by miR-424 and miR-491-5p respectively. The results of validation of hub genes expression in GC tissues indicated that in DFS<1-year group, the expression of miR-424 decreased significantly, notably upregulated expression of SMURF1 was also detected.Conclusion: Our results implied that miR-424, as a tumor suppressor, could deregulate SMURF1 in DDP-resistant GC cells.Keywords: gastric cancer, cisplatin drug resistance, miRNAs
topic Gastric cancer
Cisplatin
Drug resistance
miRNAs
url https://www.dovepress.com/microrna-424-regulates-cisplatin-resistance-of-gastric-cancer-by-targe-peer-reviewed-article-OTT
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