Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops

The plasticity of plant development relies on its ability to balance growth and stress resistance. To do this, plants have established highly coordinated gene regulatory networks (GRNs) of the transcription factors and signaling components involved in developmental processes and stress responses. In...

Full description

Bibliographic Details
Main Authors: Nam V. Hoang, Chulmin Park, Muhammad Kamran, Ji-Young Lee
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-06-01
Series:Frontiers in Plant Science
Subjects:
GRN
Online Access:https://www.frontiersin.org/article/10.3389/fpls.2020.00762/full
id doaj-32b00bdc0c774679a806bf88d476fa43
record_format Article
spelling doaj-32b00bdc0c774679a806bf88d476fa432020-11-25T03:47:14ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2020-06-011110.3389/fpls.2020.00762541815Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root CropsNam V. Hoang0Chulmin Park1Muhammad Kamran2Ji-Young Lee3Ji-Young Lee4School of Biological Sciences, Seoul National University, Seoul, South KoreaSchool of Biological Sciences, Seoul National University, Seoul, South KoreaSchool of Biological Sciences, Seoul National University, Seoul, South KoreaSchool of Biological Sciences, Seoul National University, Seoul, South KoreaPlant Genomics and Breeding Institute, Seoul National University, Seoul, South KoreaThe plasticity of plant development relies on its ability to balance growth and stress resistance. To do this, plants have established highly coordinated gene regulatory networks (GRNs) of the transcription factors and signaling components involved in developmental processes and stress responses. In root crops, yields of storage roots are mainly determined by secondary growth driven by the vascular cambium. In relation to this, a dynamic yet intricate GRN should operate in the vascular cambium, in coordination with environmental changes. Despite the significance of root crops as food sources, GRNs wired to mediate secondary growth in the storage root have just begun to emerge, specifically with the study of the radish. Gene expression data available with regard to other important root crops are not detailed enough for us directly to infer underlying molecular mechanisms. Thus, in this review, we provide a general overview of the regulatory programs governing the development and functions of the vascular cambium in model systems, and the role of the vascular cambium on the growth and yield potential of the storage roots in root crops. We then undertake a reanalysis of recent gene expression data generated for major root crops and discuss common GRNs involved in the vascular cambium-driven secondary growth in storage roots using the wealth of information available in Arabidopsis. Finally, we propose future engineering schemes for improving root crop yields by modifying potential key nodes in GRNs.https://www.frontiersin.org/article/10.3389/fpls.2020.00762/fullgene regulatory networkGRNstorage root developmentsecondary growthcambiumstress-responsive gene
collection DOAJ
language English
format Article
sources DOAJ
author Nam V. Hoang
Chulmin Park
Muhammad Kamran
Ji-Young Lee
Ji-Young Lee
spellingShingle Nam V. Hoang
Chulmin Park
Muhammad Kamran
Ji-Young Lee
Ji-Young Lee
Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops
Frontiers in Plant Science
gene regulatory network
GRN
storage root development
secondary growth
cambium
stress-responsive gene
author_facet Nam V. Hoang
Chulmin Park
Muhammad Kamran
Ji-Young Lee
Ji-Young Lee
author_sort Nam V. Hoang
title Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops
title_short Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops
title_full Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops
title_fullStr Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops
title_full_unstemmed Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops
title_sort gene regulatory network guided investigations and engineering of storage root development in root crops
publisher Frontiers Media S.A.
series Frontiers in Plant Science
issn 1664-462X
publishDate 2020-06-01
description The plasticity of plant development relies on its ability to balance growth and stress resistance. To do this, plants have established highly coordinated gene regulatory networks (GRNs) of the transcription factors and signaling components involved in developmental processes and stress responses. In root crops, yields of storage roots are mainly determined by secondary growth driven by the vascular cambium. In relation to this, a dynamic yet intricate GRN should operate in the vascular cambium, in coordination with environmental changes. Despite the significance of root crops as food sources, GRNs wired to mediate secondary growth in the storage root have just begun to emerge, specifically with the study of the radish. Gene expression data available with regard to other important root crops are not detailed enough for us directly to infer underlying molecular mechanisms. Thus, in this review, we provide a general overview of the regulatory programs governing the development and functions of the vascular cambium in model systems, and the role of the vascular cambium on the growth and yield potential of the storage roots in root crops. We then undertake a reanalysis of recent gene expression data generated for major root crops and discuss common GRNs involved in the vascular cambium-driven secondary growth in storage roots using the wealth of information available in Arabidopsis. Finally, we propose future engineering schemes for improving root crop yields by modifying potential key nodes in GRNs.
topic gene regulatory network
GRN
storage root development
secondary growth
cambium
stress-responsive gene
url https://www.frontiersin.org/article/10.3389/fpls.2020.00762/full
work_keys_str_mv AT namvhoang generegulatorynetworkguidedinvestigationsandengineeringofstoragerootdevelopmentinrootcrops
AT chulminpark generegulatorynetworkguidedinvestigationsandengineeringofstoragerootdevelopmentinrootcrops
AT muhammadkamran generegulatorynetworkguidedinvestigationsandengineeringofstoragerootdevelopmentinrootcrops
AT jiyounglee generegulatorynetworkguidedinvestigationsandengineeringofstoragerootdevelopmentinrootcrops
AT jiyounglee generegulatorynetworkguidedinvestigationsandengineeringofstoragerootdevelopmentinrootcrops
_version_ 1724502724253319168