Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing process

The development of next generation sequencing techniques has facilitated the detection of mutations at an unprecedented rate. These efficient tools have been particularly beneficial for extremely heterogeneous disorders such as autosomal recessive non-syndromic hearing loss, the most common form of...

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Main Authors: Mona Mahfood, Jihen Chouchen, Walaa Kamal Eddine Ahmad Mohamed, Abdullah Al Mutery, Rania Harati, Abdelaziz Tlili
Format: Article
Language:English
Published: Elsevier 2021-08-01
Series:Saudi Journal of Biological Sciences
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S1319562X21002977
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spelling doaj-2b1bab4f441b4b9fa8905ee2048a27412021-07-23T04:47:44ZengElsevierSaudi Journal of Biological Sciences1319-562X2021-08-0128844214429Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing processMona Mahfood0Jihen Chouchen1Walaa Kamal Eddine Ahmad Mohamed2Abdullah Al Mutery3Rania Harati4Abdelaziz Tlili5Department of Applied Biology, College of Sciences, University of Sharjah, Sharjah, United Arab EmiratesHuman Genetics and Stem Cell Research Group, Research Institute of Sciences and Engineering, University of Sharjah, Sharjah, United Arab EmiratesHuman Genetics and Stem Cell Research Group, Research Institute of Sciences and Engineering, University of Sharjah, Sharjah, United Arab EmiratesDepartment of Applied Biology, College of Sciences, University of Sharjah, Sharjah, United Arab Emirates; Human Genetics and Stem Cell Research Group, Research Institute of Sciences and Engineering, University of Sharjah, Sharjah, United Arab EmiratesDepartment of Pharmacy Practice and Pharmacotherapeutics, College of Pharmacy, University of Sharjah, Sharjah, United Arab EmiratesDepartment of Applied Biology, College of Sciences, University of Sharjah, Sharjah, United Arab Emirates; Human Genetics and Stem Cell Research Group, Research Institute of Sciences and Engineering, University of Sharjah, Sharjah, United Arab Emirates; Corresponding author at: Department of Applied Biology, College of Sciences, University of Sharjah, Building W8 - Room 107, Sharjah, P.O. Box: 27272, United Arab Emirates.The development of next generation sequencing techniques has facilitated the detection of mutations at an unprecedented rate. These efficient tools have been particularly beneficial for extremely heterogeneous disorders such as autosomal recessive non-syndromic hearing loss, the most common form of genetic deafness. GJB2 mutations are the most common cause of hereditary hearing loss. Amongst them the NM_004004.5: c.506G > A (p.Cys169Tyr) mutation has been associated with varying severity of hearing loss with unclear segregation patterns. In this study, we report a large consanguineous Emirati family with severe to profound hearing loss fully segregating the GJB2 missense mutation p.Cys169Tyr. Whole exome sequencing (WES), in silico, splicing and expression analyses ruled out the implication of any other variants and confirmed the implication of the p.Cys169Tyr mutation in this deafness family. We also show preliminary murine expression analysis that suggests a link between the TMEM59 gene and the hearing process. The present study improves our understanding of the molecular pathogenesis of hearing loss. It also emphasizes the significance of combining next generation sequencing approaches and segregation analyses especially in the diagnosis of disorders characterized by complex genetic heterogeneity.http://www.sciencedirect.com/science/article/pii/S1319562X21002977Whole exome sequencingGJB2 geneMissense mutationNon-syndromic hearing loss
collection DOAJ
language English
format Article
sources DOAJ
author Mona Mahfood
Jihen Chouchen
Walaa Kamal Eddine Ahmad Mohamed
Abdullah Al Mutery
Rania Harati
Abdelaziz Tlili
spellingShingle Mona Mahfood
Jihen Chouchen
Walaa Kamal Eddine Ahmad Mohamed
Abdullah Al Mutery
Rania Harati
Abdelaziz Tlili
Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing process
Saudi Journal of Biological Sciences
Whole exome sequencing
GJB2 gene
Missense mutation
Non-syndromic hearing loss
author_facet Mona Mahfood
Jihen Chouchen
Walaa Kamal Eddine Ahmad Mohamed
Abdullah Al Mutery
Rania Harati
Abdelaziz Tlili
author_sort Mona Mahfood
title Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing process
title_short Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing process
title_full Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing process
title_fullStr Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing process
title_full_unstemmed Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing process
title_sort whole exome sequencing, in silico and functional studies confirm the association of the gjb2 mutation p.cys169tyr with deafness and suggest a role for the tmem59 gene in the hearing process
publisher Elsevier
series Saudi Journal of Biological Sciences
issn 1319-562X
publishDate 2021-08-01
description The development of next generation sequencing techniques has facilitated the detection of mutations at an unprecedented rate. These efficient tools have been particularly beneficial for extremely heterogeneous disorders such as autosomal recessive non-syndromic hearing loss, the most common form of genetic deafness. GJB2 mutations are the most common cause of hereditary hearing loss. Amongst them the NM_004004.5: c.506G > A (p.Cys169Tyr) mutation has been associated with varying severity of hearing loss with unclear segregation patterns. In this study, we report a large consanguineous Emirati family with severe to profound hearing loss fully segregating the GJB2 missense mutation p.Cys169Tyr. Whole exome sequencing (WES), in silico, splicing and expression analyses ruled out the implication of any other variants and confirmed the implication of the p.Cys169Tyr mutation in this deafness family. We also show preliminary murine expression analysis that suggests a link between the TMEM59 gene and the hearing process. The present study improves our understanding of the molecular pathogenesis of hearing loss. It also emphasizes the significance of combining next generation sequencing approaches and segregation analyses especially in the diagnosis of disorders characterized by complex genetic heterogeneity.
topic Whole exome sequencing
GJB2 gene
Missense mutation
Non-syndromic hearing loss
url http://www.sciencedirect.com/science/article/pii/S1319562X21002977
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