Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed
Barnyardgrass is a problematic agricultural weed. Here, via genomic analysis, Guo et al. identify genes potentially underlying its success, including a gene cluster activated in response to co-cultivation with rice that leads to synthesis of the allelochemical DIMBOA.
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Nature Publishing Group
2017-10-01
|
| Series: | Nature Communications |
| Online Access: | https://doi.org/10.1038/s41467-017-01067-5 |
| id |
doaj-2a27bed1b65c46d7b310fd958cae709d |
|---|---|
| record_format |
Article |
| collection |
DOAJ |
| language |
English |
| format |
Article |
| sources |
DOAJ |
| author |
Longbiao Guo Jie Qiu Chuyu Ye Gulei Jin Lingfeng Mao Haiqiang Zhang Xuefang Yang Qiong Peng Yingying Wang Lei Jia Zhangxiang Lin Gengmi Li Fei Fu Chen Liu Li Chen Enhui Shen Weidi Wang Qinjie Chu Dongya Wu Sanling Wu Chenyang Xia Yongfei Zhang Xiaomao Zhou Lifeng Wang Lamei Wu Weijie Song Yunfei Wang Qingyao Shu Daisuke Aoki Emi Yumoto Takao Yokota Koji Miyamoto Kazunori Okada Do-Soon Kim Daguang Cai Chulong Zhang Yonggen Lou Qian Qian Hirofumi Yamaguchi Hisakazu Yamane Chui-Hua Kong Michael P. Timko Lianyang Bai Longjiang Fan |
| spellingShingle |
Longbiao Guo Jie Qiu Chuyu Ye Gulei Jin Lingfeng Mao Haiqiang Zhang Xuefang Yang Qiong Peng Yingying Wang Lei Jia Zhangxiang Lin Gengmi Li Fei Fu Chen Liu Li Chen Enhui Shen Weidi Wang Qinjie Chu Dongya Wu Sanling Wu Chenyang Xia Yongfei Zhang Xiaomao Zhou Lifeng Wang Lamei Wu Weijie Song Yunfei Wang Qingyao Shu Daisuke Aoki Emi Yumoto Takao Yokota Koji Miyamoto Kazunori Okada Do-Soon Kim Daguang Cai Chulong Zhang Yonggen Lou Qian Qian Hirofumi Yamaguchi Hisakazu Yamane Chui-Hua Kong Michael P. Timko Lianyang Bai Longjiang Fan Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed Nature Communications |
| author_facet |
Longbiao Guo Jie Qiu Chuyu Ye Gulei Jin Lingfeng Mao Haiqiang Zhang Xuefang Yang Qiong Peng Yingying Wang Lei Jia Zhangxiang Lin Gengmi Li Fei Fu Chen Liu Li Chen Enhui Shen Weidi Wang Qinjie Chu Dongya Wu Sanling Wu Chenyang Xia Yongfei Zhang Xiaomao Zhou Lifeng Wang Lamei Wu Weijie Song Yunfei Wang Qingyao Shu Daisuke Aoki Emi Yumoto Takao Yokota Koji Miyamoto Kazunori Okada Do-Soon Kim Daguang Cai Chulong Zhang Yonggen Lou Qian Qian Hirofumi Yamaguchi Hisakazu Yamane Chui-Hua Kong Michael P. Timko Lianyang Bai Longjiang Fan |
| author_sort |
Longbiao Guo |
| title |
Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed |
| title_short |
Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed |
| title_full |
Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed |
| title_fullStr |
Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed |
| title_full_unstemmed |
Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed |
| title_sort |
echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed |
| publisher |
Nature Publishing Group |
| series |
Nature Communications |
| issn |
2041-1723 |
| publishDate |
2017-10-01 |
| description |
Barnyardgrass is a problematic agricultural weed. Here, via genomic analysis, Guo et al. identify genes potentially underlying its success, including a gene cluster activated in response to co-cultivation with rice that leads to synthesis of the allelochemical DIMBOA. |
| url |
https://doi.org/10.1038/s41467-017-01067-5 |
| work_keys_str_mv |
AT longbiaoguo echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT jieqiu echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT chuyuye echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT guleijin echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT lingfengmao echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT haiqiangzhang echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT xuefangyang echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT qiongpeng echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT yingyingwang echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT leijia echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT zhangxianglin echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT gengmili echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT feifu echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT chenliu echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT lichen echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT enhuishen echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT weidiwang echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT qinjiechu echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT dongyawu echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT sanlingwu echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT chenyangxia echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT yongfeizhang echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT xiaomaozhou echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT lifengwang echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT lameiwu echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT weijiesong echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT yunfeiwang echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT qingyaoshu echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT daisukeaoki echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT emiyumoto echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT takaoyokota echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT kojimiyamoto echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT kazunoriokada echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT dosoonkim echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT daguangcai echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT chulongzhang echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT yonggenlou echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT qianqian echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT hirofumiyamaguchi echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT hisakazuyamane echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT chuihuakong echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT michaelptimko echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT lianyangbai echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed AT longjiangfan echinochloacrusgalligenomeanalysisprovidesinsightintoitsadaptationandinvasivenessasaweed |
| _version_ |
1721451491520151552 |
| spelling |
doaj-2a27bed1b65c46d7b310fd958cae709d2021-05-11T07:51:03ZengNature Publishing GroupNature Communications2041-17232017-10-018111010.1038/s41467-017-01067-5Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weedLongbiao Guo0Jie Qiu1Chuyu Ye2Gulei Jin3Lingfeng Mao4Haiqiang Zhang5Xuefang Yang6Qiong Peng7Yingying Wang8Lei Jia9Zhangxiang Lin10Gengmi Li11Fei Fu12Chen Liu13Li Chen14Enhui Shen15Weidi Wang16Qinjie Chu17Dongya Wu18Sanling Wu19Chenyang Xia20Yongfei Zhang21Xiaomao Zhou22Lifeng Wang23Lamei Wu24Weijie Song25Yunfei Wang26Qingyao Shu27Daisuke Aoki28Emi Yumoto29Takao Yokota30Koji Miyamoto31Kazunori Okada32Do-Soon Kim33Daguang Cai34Chulong Zhang35Yonggen Lou36Qian Qian37Hirofumi Yamaguchi38Hisakazu Yamane39Chui-Hua Kong40Michael P. Timko41Lianyang Bai42Longjiang Fan43China National Rice Research Institute, Chinese Academy of Agricultural SciencesInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityGuhe InformationInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityCollege of Resources and Environmental Sciences, China Agricultural UniversityHunan Weed Science Key Laboratory, Hunan Academy of Agriculture ScienceInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityChina National Rice Research Institute, Chinese Academy of Agricultural SciencesInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityAnalysis Center of Agrobiology and Environmental Sciences, Faculty of Agriculture, Life and Environmental Sciences, , Zhejiang UniversityState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang UniversityHunan Weed Science Key Laboratory, Hunan Academy of Agriculture ScienceHunan Weed Science Key Laboratory, Hunan Academy of Agriculture ScienceHunan Weed Science Key Laboratory, Hunan Academy of Agriculture ScienceHunan Weed Science Key Laboratory, Hunan Academy of Agriculture ScienceGuhe InformationZhejiang Sheng Ting Biotechnology Co., Ltd.Institute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityDepartment of Bioscience, Faculty of Biotechnology, Fukui Prefectural UniversityDepartment of Biosciences, Teikyo UniversityDepartment of Biosciences, Teikyo UniversityDepartment of Biosciences, Teikyo UniversityBiotechnology Research Center, The University of TokyoDepartment of Plant Science, Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National UniversityDepartment of Molecular Phytopathology and Biotechnology, Christian-Albrechts-University of KielState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang UniversityState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang UniversityChina National Rice Research Institute, Chinese Academy of Agricultural SciencesFaculty of Agriculture, Tokyo University of AgricultureDepartment of Biosciences, Teikyo UniversityCollege of Resources and Environmental Sciences, China Agricultural UniversityDepartment of Biology, University of VirginiaHunan Weed Science Key Laboratory, Hunan Academy of Agriculture ScienceInstitute of Crop Science and Institute of Bioinformatics, Zhejiang UniversityBarnyardgrass is a problematic agricultural weed. Here, via genomic analysis, Guo et al. identify genes potentially underlying its success, including a gene cluster activated in response to co-cultivation with rice that leads to synthesis of the allelochemical DIMBOA.https://doi.org/10.1038/s41467-017-01067-5 |