Identifying Leaf Phenology of Deciduous Broadleaf Forests from PhenoCam Images Using a Convolutional Neural Network Regression Method

Vegetation phenology plays a key role in influencing ecosystem processes and biosphere-atmosphere feedbacks. Digital cameras such as PhenoCam that monitor vegetation canopies in near real-time provide continuous images that record phenological and environmental changes. There is a need to develop me...

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Main Authors: Mengying Cao, Ying Sun, Xin Jiang, Ziming Li, Qinchuan Xin
Format: Article
Language:English
Published: MDPI AG 2021-06-01
Series:Remote Sensing
Subjects:
Online Access:https://www.mdpi.com/2072-4292/13/12/2331
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spelling doaj-289bca85c0da4b228c80c4aeca001d6b2021-07-01T00:08:07ZengMDPI AGRemote Sensing2072-42922021-06-01132331233110.3390/rs13122331Identifying Leaf Phenology of Deciduous Broadleaf Forests from PhenoCam Images Using a Convolutional Neural Network Regression MethodMengying Cao0Ying Sun1Xin Jiang2Ziming Li3Qinchuan Xin4Guangdong Key Laboratory for Urbanization and Geo-Simulation, School of Geography and Planning, Sun Yat-sen University, Guangzhou 510275, ChinaGuangdong Key Laboratory for Urbanization and Geo-Simulation, School of Geography and Planning, Sun Yat-sen University, Guangzhou 510275, ChinaSchool of Environmental Science and Engineering, Southern University of Science and Technology, Shenzhen 518055, ChinaGuangdong Key Laboratory for Urbanization and Geo-Simulation, School of Geography and Planning, Sun Yat-sen University, Guangzhou 510275, ChinaGuangdong Key Laboratory for Urbanization and Geo-Simulation, School of Geography and Planning, Sun Yat-sen University, Guangzhou 510275, ChinaVegetation phenology plays a key role in influencing ecosystem processes and biosphere-atmosphere feedbacks. Digital cameras such as PhenoCam that monitor vegetation canopies in near real-time provide continuous images that record phenological and environmental changes. There is a need to develop methods for automated and effective detection of vegetation dynamics from PhenoCam images. Here we developed a method to predict leaf phenology of deciduous broadleaf forests from individual PhenoCam images using deep learning approaches. We tested four convolutional neural network regression (CNNR) networks on their ability to predict vegetation growing dates based on PhenoCam images at 56 sites in North America. In the one-site experiment, the predicted phenology dated to after the leaf-out events agree well with the observed data, with a coefficient of determination (R2) of nearly 0.999, a root mean square error (RMSE) of up to 3.7 days, and a mean absolute error (MAE) of up to 2.1 days. The method developed achieved lower accuracies in the all-site experiment than in the one-site experiment, and the achieved R2 was 0.843, RMSE was 25.2 days, and MAE was 9.3 days in the all-site experiment. The model accuracy increased when the deep networks used the region of interest images rather than the entire images as inputs. Compared to the existing methods that rely on time series of PhenoCam images for studying leaf phenology, we found that the deep learning method is a feasible solution to identify leaf phenology of deciduous broadleaf forests from individual PhenoCam images.https://www.mdpi.com/2072-4292/13/12/2331leaf phenologyconvolutional neural network regressionPhenoCamimage segmentationgreen chromatic coordinate
collection DOAJ
language English
format Article
sources DOAJ
author Mengying Cao
Ying Sun
Xin Jiang
Ziming Li
Qinchuan Xin
spellingShingle Mengying Cao
Ying Sun
Xin Jiang
Ziming Li
Qinchuan Xin
Identifying Leaf Phenology of Deciduous Broadleaf Forests from PhenoCam Images Using a Convolutional Neural Network Regression Method
Remote Sensing
leaf phenology
convolutional neural network regression
PhenoCam
image segmentation
green chromatic coordinate
author_facet Mengying Cao
Ying Sun
Xin Jiang
Ziming Li
Qinchuan Xin
author_sort Mengying Cao
title Identifying Leaf Phenology of Deciduous Broadleaf Forests from PhenoCam Images Using a Convolutional Neural Network Regression Method
title_short Identifying Leaf Phenology of Deciduous Broadleaf Forests from PhenoCam Images Using a Convolutional Neural Network Regression Method
title_full Identifying Leaf Phenology of Deciduous Broadleaf Forests from PhenoCam Images Using a Convolutional Neural Network Regression Method
title_fullStr Identifying Leaf Phenology of Deciduous Broadleaf Forests from PhenoCam Images Using a Convolutional Neural Network Regression Method
title_full_unstemmed Identifying Leaf Phenology of Deciduous Broadleaf Forests from PhenoCam Images Using a Convolutional Neural Network Regression Method
title_sort identifying leaf phenology of deciduous broadleaf forests from phenocam images using a convolutional neural network regression method
publisher MDPI AG
series Remote Sensing
issn 2072-4292
publishDate 2021-06-01
description Vegetation phenology plays a key role in influencing ecosystem processes and biosphere-atmosphere feedbacks. Digital cameras such as PhenoCam that monitor vegetation canopies in near real-time provide continuous images that record phenological and environmental changes. There is a need to develop methods for automated and effective detection of vegetation dynamics from PhenoCam images. Here we developed a method to predict leaf phenology of deciduous broadleaf forests from individual PhenoCam images using deep learning approaches. We tested four convolutional neural network regression (CNNR) networks on their ability to predict vegetation growing dates based on PhenoCam images at 56 sites in North America. In the one-site experiment, the predicted phenology dated to after the leaf-out events agree well with the observed data, with a coefficient of determination (R2) of nearly 0.999, a root mean square error (RMSE) of up to 3.7 days, and a mean absolute error (MAE) of up to 2.1 days. The method developed achieved lower accuracies in the all-site experiment than in the one-site experiment, and the achieved R2 was 0.843, RMSE was 25.2 days, and MAE was 9.3 days in the all-site experiment. The model accuracy increased when the deep networks used the region of interest images rather than the entire images as inputs. Compared to the existing methods that rely on time series of PhenoCam images for studying leaf phenology, we found that the deep learning method is a feasible solution to identify leaf phenology of deciduous broadleaf forests from individual PhenoCam images.
topic leaf phenology
convolutional neural network regression
PhenoCam
image segmentation
green chromatic coordinate
url https://www.mdpi.com/2072-4292/13/12/2331
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