Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark

Abstract The COVID-19 pandemic has put massive strains on hospitals, and tools to guide hospital planners in resource allocation during the ebbs and flows of the pandemic are urgently needed. We investigate whether machine learning (ML) can be used for predictions of intensive care requirements a fi...

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Main Authors: Stephan Sloth Lorenzen, Mads Nielsen, Espen Jimenez-Solem, Tonny Studsgaard Petersen, Anders Perner, Hans-Christian Thorsen-Meyer, Christian Igel, Martin Sillesen
Format: Article
Language:English
Published: Nature Publishing Group 2021-09-01
Series:Scientific Reports
Online Access:https://doi.org/10.1038/s41598-021-98617-1
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spelling doaj-26af521884ea431b92de430cf87dfbb32021-09-26T11:27:18ZengNature Publishing GroupScientific Reports2045-23222021-09-0111111010.1038/s41598-021-98617-1Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in DenmarkStephan Sloth Lorenzen0Mads Nielsen1Espen Jimenez-Solem2Tonny Studsgaard Petersen3Anders Perner4Hans-Christian Thorsen-Meyer5Christian Igel6Martin Sillesen7Department of Computer Science, University of CopenhagenDepartment of Computer Science, University of CopenhagenDepartment of Clinical Pharmacology, Copenhagen University Hospital, BispebjergDepartment of Clinical Pharmacology, Copenhagen University Hospital, BispebjergDepartment of Intensive Care, Copenhagen University Hospital, RigshospitaletDepartment of Intensive Care, Copenhagen University Hospital, RigshospitaletDepartment of Computer Science, University of CopenhagenDepartment of Surgical Gastroenterology, Copenhagen University Hospital, RigshospitaletAbstract The COVID-19 pandemic has put massive strains on hospitals, and tools to guide hospital planners in resource allocation during the ebbs and flows of the pandemic are urgently needed. We investigate whether machine learning (ML) can be used for predictions of intensive care requirements a fixed number of days into the future. Retrospective design where health Records from 42,526 SARS-CoV-2 positive patients in Denmark was extracted. Random Forest (RF) models were trained to predict risk of ICU admission and use of mechanical ventilation after n days (n = 1, 2, …, 15). An extended analysis was provided for n = 5 and n = 10. Models predicted n-day risk of ICU admission with an area under the receiver operator characteristic curve (ROC-AUC) between 0.981 and 0.995, and n-day risk of use of ventilation with an ROC-AUC between 0.982 and 0.997. The corresponding n-day forecasting models predicted the needed ICU capacity with a coefficient of determination (R2) between 0.334 and 0.989 and use of ventilation with an R2 between 0.446 and 0.973. The forecasting models performed worst, when forecasting many days into the future (for large n). For n = 5, ICU capacity was predicted with ROC-AUC 0.990 and R2 0.928, and use of ventilator was predicted with ROC-AUC 0.994 and R2 0.854. Random Forest-based modelling can be used for accurate n-day forecasting predictions of ICU resource requirements, when n is not too large.https://doi.org/10.1038/s41598-021-98617-1
collection DOAJ
language English
format Article
sources DOAJ
author Stephan Sloth Lorenzen
Mads Nielsen
Espen Jimenez-Solem
Tonny Studsgaard Petersen
Anders Perner
Hans-Christian Thorsen-Meyer
Christian Igel
Martin Sillesen
spellingShingle Stephan Sloth Lorenzen
Mads Nielsen
Espen Jimenez-Solem
Tonny Studsgaard Petersen
Anders Perner
Hans-Christian Thorsen-Meyer
Christian Igel
Martin Sillesen
Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark
Scientific Reports
author_facet Stephan Sloth Lorenzen
Mads Nielsen
Espen Jimenez-Solem
Tonny Studsgaard Petersen
Anders Perner
Hans-Christian Thorsen-Meyer
Christian Igel
Martin Sillesen
author_sort Stephan Sloth Lorenzen
title Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark
title_short Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark
title_full Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark
title_fullStr Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark
title_full_unstemmed Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark
title_sort using machine learning for predicting intensive care unit resource use during the covid-19 pandemic in denmark
publisher Nature Publishing Group
series Scientific Reports
issn 2045-2322
publishDate 2021-09-01
description Abstract The COVID-19 pandemic has put massive strains on hospitals, and tools to guide hospital planners in resource allocation during the ebbs and flows of the pandemic are urgently needed. We investigate whether machine learning (ML) can be used for predictions of intensive care requirements a fixed number of days into the future. Retrospective design where health Records from 42,526 SARS-CoV-2 positive patients in Denmark was extracted. Random Forest (RF) models were trained to predict risk of ICU admission and use of mechanical ventilation after n days (n = 1, 2, …, 15). An extended analysis was provided for n = 5 and n = 10. Models predicted n-day risk of ICU admission with an area under the receiver operator characteristic curve (ROC-AUC) between 0.981 and 0.995, and n-day risk of use of ventilation with an ROC-AUC between 0.982 and 0.997. The corresponding n-day forecasting models predicted the needed ICU capacity with a coefficient of determination (R2) between 0.334 and 0.989 and use of ventilation with an R2 between 0.446 and 0.973. The forecasting models performed worst, when forecasting many days into the future (for large n). For n = 5, ICU capacity was predicted with ROC-AUC 0.990 and R2 0.928, and use of ventilator was predicted with ROC-AUC 0.994 and R2 0.854. Random Forest-based modelling can be used for accurate n-day forecasting predictions of ICU resource requirements, when n is not too large.
url https://doi.org/10.1038/s41598-021-98617-1
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