Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark
Abstract The COVID-19 pandemic has put massive strains on hospitals, and tools to guide hospital planners in resource allocation during the ebbs and flows of the pandemic are urgently needed. We investigate whether machine learning (ML) can be used for predictions of intensive care requirements a fi...
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2021-09-01
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doaj-26af521884ea431b92de430cf87dfbb32021-09-26T11:27:18ZengNature Publishing GroupScientific Reports2045-23222021-09-0111111010.1038/s41598-021-98617-1Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in DenmarkStephan Sloth Lorenzen0Mads Nielsen1Espen Jimenez-Solem2Tonny Studsgaard Petersen3Anders Perner4Hans-Christian Thorsen-Meyer5Christian Igel6Martin Sillesen7Department of Computer Science, University of CopenhagenDepartment of Computer Science, University of CopenhagenDepartment of Clinical Pharmacology, Copenhagen University Hospital, BispebjergDepartment of Clinical Pharmacology, Copenhagen University Hospital, BispebjergDepartment of Intensive Care, Copenhagen University Hospital, RigshospitaletDepartment of Intensive Care, Copenhagen University Hospital, RigshospitaletDepartment of Computer Science, University of CopenhagenDepartment of Surgical Gastroenterology, Copenhagen University Hospital, RigshospitaletAbstract The COVID-19 pandemic has put massive strains on hospitals, and tools to guide hospital planners in resource allocation during the ebbs and flows of the pandemic are urgently needed. We investigate whether machine learning (ML) can be used for predictions of intensive care requirements a fixed number of days into the future. Retrospective design where health Records from 42,526 SARS-CoV-2 positive patients in Denmark was extracted. Random Forest (RF) models were trained to predict risk of ICU admission and use of mechanical ventilation after n days (n = 1, 2, …, 15). An extended analysis was provided for n = 5 and n = 10. Models predicted n-day risk of ICU admission with an area under the receiver operator characteristic curve (ROC-AUC) between 0.981 and 0.995, and n-day risk of use of ventilation with an ROC-AUC between 0.982 and 0.997. The corresponding n-day forecasting models predicted the needed ICU capacity with a coefficient of determination (R2) between 0.334 and 0.989 and use of ventilation with an R2 between 0.446 and 0.973. The forecasting models performed worst, when forecasting many days into the future (for large n). For n = 5, ICU capacity was predicted with ROC-AUC 0.990 and R2 0.928, and use of ventilator was predicted with ROC-AUC 0.994 and R2 0.854. Random Forest-based modelling can be used for accurate n-day forecasting predictions of ICU resource requirements, when n is not too large.https://doi.org/10.1038/s41598-021-98617-1 |
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DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Stephan Sloth Lorenzen Mads Nielsen Espen Jimenez-Solem Tonny Studsgaard Petersen Anders Perner Hans-Christian Thorsen-Meyer Christian Igel Martin Sillesen |
spellingShingle |
Stephan Sloth Lorenzen Mads Nielsen Espen Jimenez-Solem Tonny Studsgaard Petersen Anders Perner Hans-Christian Thorsen-Meyer Christian Igel Martin Sillesen Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark Scientific Reports |
author_facet |
Stephan Sloth Lorenzen Mads Nielsen Espen Jimenez-Solem Tonny Studsgaard Petersen Anders Perner Hans-Christian Thorsen-Meyer Christian Igel Martin Sillesen |
author_sort |
Stephan Sloth Lorenzen |
title |
Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark |
title_short |
Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark |
title_full |
Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark |
title_fullStr |
Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark |
title_full_unstemmed |
Using machine learning for predicting intensive care unit resource use during the COVID-19 pandemic in Denmark |
title_sort |
using machine learning for predicting intensive care unit resource use during the covid-19 pandemic in denmark |
publisher |
Nature Publishing Group |
series |
Scientific Reports |
issn |
2045-2322 |
publishDate |
2021-09-01 |
description |
Abstract The COVID-19 pandemic has put massive strains on hospitals, and tools to guide hospital planners in resource allocation during the ebbs and flows of the pandemic are urgently needed. We investigate whether machine learning (ML) can be used for predictions of intensive care requirements a fixed number of days into the future. Retrospective design where health Records from 42,526 SARS-CoV-2 positive patients in Denmark was extracted. Random Forest (RF) models were trained to predict risk of ICU admission and use of mechanical ventilation after n days (n = 1, 2, …, 15). An extended analysis was provided for n = 5 and n = 10. Models predicted n-day risk of ICU admission with an area under the receiver operator characteristic curve (ROC-AUC) between 0.981 and 0.995, and n-day risk of use of ventilation with an ROC-AUC between 0.982 and 0.997. The corresponding n-day forecasting models predicted the needed ICU capacity with a coefficient of determination (R2) between 0.334 and 0.989 and use of ventilation with an R2 between 0.446 and 0.973. The forecasting models performed worst, when forecasting many days into the future (for large n). For n = 5, ICU capacity was predicted with ROC-AUC 0.990 and R2 0.928, and use of ventilator was predicted with ROC-AUC 0.994 and R2 0.854. Random Forest-based modelling can be used for accurate n-day forecasting predictions of ICU resource requirements, when n is not too large. |
url |
https://doi.org/10.1038/s41598-021-98617-1 |
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