Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines

Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines

Abstract Background Human cancer cell lines are fundamental models for cancer research and therapeutic strategy development. However, there is no characterization of circular RNAs (circRNAs) in a large number of cancer cell lines. Methods Here, we apply four circRNA identification algorithms to heur...

Full description

Bibliographic Details
Main Authors:	Hang Ruan, Yu Xiang, Junsuk Ko, Shengli Li, Ying Jing, Xiaoyu Zhu, Youqiong Ye, Zhao Zhang, Tingting Mills, Jing Feng, Chun-Jie Liu, Ji Jing, Jin Cao, Bingying Zhou, Li Wang, Yubin Zhou, Chunru Lin, An-Yuan Guo, Xi Chen, Lixia Diao, Wenbo Li, Zhiao Chen, Xianghuo He, Gordon B. Mills, Michael R. Blackburn, Leng Han
Format:	Article
Language:	English
Published:	BMC 2019-08-01
Series:	Genome Medicine
Online Access:	http://link.springer.com/article/10.1186/s13073-019-0663-5

Similar Items

Optimized protocol for an inducible rat model of liver tumor with chronic hepatocellular injury, inflammation, fibrosis, and cirrhosis
by: Zhiao Chen, et al.
Published: (2021-03-01)

Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer
by: Zhao Zhang, et al.
Published: (2019-10-01)

Sex-associated molecular differences for cancer immunotherapy
by: Youqiong Ye, et al.
Published: (2020-04-01)

The genetic and pharmacogenomic landscape of snoRNAs in human cancer
by: Yaoming Liu, et al.
Published: (2020-06-01)

Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment
by: Hang Ruan, et al.
Published: (2019-11-01)

HNRNPL Circularizes ARHGAP35 to Produce an Oncogenic Protein
by: Yan Li, et al.
Published: (2021-07-01)

Circular RNAs as promising biomarkers in cancer: detection, function, and beyond
by: Shengli Li, et al.
Published: (2019-03-01)

The Mutational and Transcriptional Landscapes of Hepatocarcinogenesis in a Rat Model
by: Zhiao Chen, et al.
Published: (2020-11-01)

Candiduria in hospitalized patients: an investigation with the Sysmex UF-1000i urine analyzer
by: Zhengxin He, et al.
Published: (2019-05-01)

A Pan-cancer Analysis of the Expression and Clinical Relevance of Small Nucleolar RNAs in Human Cancer
by: Jing Gong, et al.
Published: (2017-11-01)

Dynamic Analysis of AP1000 Shield Building Considering Fluid and Structure Interaction Effects
by: Qiang Xu, et al.
Published: (2016-02-01)

Multi-omics prediction of immune-related adverse events during checkpoint immunotherapy
by: Ying Jing, et al.
Published: (2020-10-01)

Research on optimisation of minimum air clearance of 1000 kV UHV AC substation
by: Li Zhenqiang, et al.
Published: (2019-04-01)

A New Design of DC-DC Converter For Capacitive Deionization Process
by: Li, Zhiao
Published: (2014)

Performance of genotype imputation for low frequency and rare variants from the 1000 genomes.
by: Hou-Feng Zheng, et al.
Published: (2015-01-01)

TRIM59 promotes breast cancer motility by suppressing p62-selective autophagic degradation of PDCD10.
by: Peng Tan, et al.
Published: (2018-11-01)

A study on time-delay rumor propagation model with saturated control function
by: Chunru Li
Published: (2017-08-01)

MicroRNA-129-5p Regulates Glycolysis and Cell Proliferation by Targeting the Glucose Transporter SLC2A3 in Gastric Cancer Cells
by: Di Chen, et al.
Published: (2018-05-01)

Design and Imaging Analysis of an Offner Spectrometer for 400 nm to 1000 nm
by: Jing-Kai Hung, et al.
Published: (2015)

Uncertainty analysis and its application of radioactive source term of HPR1000 under severe accident
by: Xueyao Shi, et al.
Published: (2021-01-01)

Probabilistic MRI brain anatomical atlases based on 1,000 Chinese subjects.
by: Xing Wang, et al.
Published: (2013-01-01)

Fast pyrolysis of millimetric wood particles between 800°C and 1000°C
by: Chen, Li
Published: (2009)

Correction: Probabilistic MRI Brain Anatomical Atlases Based on 1,000 Chinese Subjects
by: Wang Xing, et al.
Published: (2013-01-01)

Correction: Probabilistic MRI Brain Anatomical Atlases Based on 1,000 Chinese Subjects.
by: Wang Xing, et al.
Published: (2013-01-01)

Automatic Procedure of Data Validation for 1/1000 Digital Topographic Maps in AutoCAD
by: JingJung Deng, et al.
Published: (2000)

Carbon Nanostructure of Kraft Lignin Thermally Treated at 500 to 1000 °C
by: Xuefeng Zhang, et al.
Published: (2017-08-01)

Evaluation of Autof MS 1000 and Vitek MS MALDI-TOF MS System in Identification of Closely-Related Yeasts Causing Invasive Fungal Diseases
by: Qiaolian Yi, et al.
Published: (2021-02-01)

Fault Sample Generation for Virtual Testability Demonstration Test Subject to Minimal Maintenance and Scheduled Replacement
by: Yong Zhang, et al.
Published: (2015-01-01)

Statistical Analysis of Time-Varying Characteristics of Testability Index Based on NHPP
by: Zhiao Zhao, et al.
Published: (2017-01-01)

Expressions of climate perturbations in western Ugandan crater lake sediment records during the last 1000 years
by: K. Mills, et al.
Published: (2014-08-01)

Dynamics Analysis of a Mathematical Model for New Product Innovation Diffusion
by: Chunru Li, et al.
Published: (2020-01-01)

Dynamics Analysis of a Delayed Rumor Propagation Model in an Emergency-Affected Environment
by: Chunru Li, et al.
Published: (2015-01-01)

Nigrostriatal dynein changes in A53T alpha-synuclein transgenic mice [v1; ref status: indexed, http://f1000r.es/2wb]
by: Yan Liu, et al.
Published: (2014-03-01)

The Role of Circular RNAs in Immune-Related Diseases
by: Rou Xie, et al.
Published: (2020-04-01)

The changes in maternal mortality in 1000 counties in mid-Western China by a government-initiated intervention.
by: Juan Liang, et al.
Published: (2012-01-01)

A history of reading in late Imperial China, 1000-1800
by: Yu, Li
Published: (2003)

Progress of the satellite laser ranging system TROS1000
by: Tangyong Guo, et al.
Published: (2015-01-01)

Cascaded Cladding Light Extracting Strippers for High Power Fiber Lasers and Amplifiers
by: Wei Guo, et al.
Published: (2014-01-01)

Effect of Nanosilica on the Fresh Properties of Cement-Based Grouting Material in the Portland-Sulphoaluminate Composite System
by: Shengli Li, et al.
Published: (2016-01-01)

Nanoengineered Metasurface Immunosensor with over 1000-Fold Electrochemiluminescence Enhancement for Ultra-sensitive Bioassay
by: Chuanping Li, et al.
Published: (2019-07-01)