Theoretical Study of the One Self-Regulating Gene in the Modified Wagner Model

Predicting how a genetic change affects a given character is a major challenge in biology, and being able to tackle this problem relies on our ability to develop realistic models of gene networks. However, such models are rarely tractable mathematically. In this paper, we propose a mathematical anal...

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Main Authors: Christophe Guyeux, Jean-François Couchot, Arnaud Le Rouzic, Jacques M. Bahi, Luigi Marangio
Format: Article
Language:English
Published: MDPI AG 2018-04-01
Series:Mathematics
Subjects:
Online Access:http://www.mdpi.com/2227-7390/6/4/58
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spelling doaj-2499f3a39d064dd5ab3b62f8e102429d2020-11-25T01:09:40ZengMDPI AGMathematics2227-73902018-04-01645810.3390/math6040058math6040058Theoretical Study of the One Self-Regulating Gene in the Modified Wagner ModelChristophe Guyeux0Jean-François Couchot1Arnaud Le Rouzic2Jacques M. Bahi3Luigi Marangio4Femto-ST Institute, UMR 6174 CNRS, University of Bourgogne Franche-Comté, 90000 Belfort, FranceFemto-ST Institute, UMR 6174 CNRS, University of Bourgogne Franche-Comté, 90000 Belfort, FranceEGCE, CNRS-IRD-Université Paris-Saclay, 91198 Gif-sur-Yvette, FranceFemto-ST Institute, UMR 6174 CNRS, University of Bourgogne Franche-Comté, 90000 Belfort, FranceFemto-ST Institute, UMR 6174 CNRS, University of Bourgogne Franche-Comté, 90000 Belfort, FrancePredicting how a genetic change affects a given character is a major challenge in biology, and being able to tackle this problem relies on our ability to develop realistic models of gene networks. However, such models are rarely tractable mathematically. In this paper, we propose a mathematical analysis of the sigmoid variant of the Wagner gene-network model. By considering the simplest case, that is, one unique self-regulating gene, we show that numerical simulations are not the only tool available to study such models: theoretical studies can be done too, by mathematical analysis of discrete dynamical systems. It is first shown that the particular sigmoid function can be theoretically investigated. Secondly, we provide an illustration of how to apply such investigations in the case of the dynamical system representing the one self-regulating gene. In this context, we focused on the composite function f a ( m . x ) where f a is the parametric sigmoid function and m is a scalar not in { 0 , 1 } and we have proven that the number of fixed-point can be deduced theoretically, according to the values of a and m.http://www.mdpi.com/2227-7390/6/4/58gene-network modelWagner modeldiscrete dynamical systems
collection DOAJ
language English
format Article
sources DOAJ
author Christophe Guyeux
Jean-François Couchot
Arnaud Le Rouzic
Jacques M. Bahi
Luigi Marangio
spellingShingle Christophe Guyeux
Jean-François Couchot
Arnaud Le Rouzic
Jacques M. Bahi
Luigi Marangio
Theoretical Study of the One Self-Regulating Gene in the Modified Wagner Model
Mathematics
gene-network model
Wagner model
discrete dynamical systems
author_facet Christophe Guyeux
Jean-François Couchot
Arnaud Le Rouzic
Jacques M. Bahi
Luigi Marangio
author_sort Christophe Guyeux
title Theoretical Study of the One Self-Regulating Gene in the Modified Wagner Model
title_short Theoretical Study of the One Self-Regulating Gene in the Modified Wagner Model
title_full Theoretical Study of the One Self-Regulating Gene in the Modified Wagner Model
title_fullStr Theoretical Study of the One Self-Regulating Gene in the Modified Wagner Model
title_full_unstemmed Theoretical Study of the One Self-Regulating Gene in the Modified Wagner Model
title_sort theoretical study of the one self-regulating gene in the modified wagner model
publisher MDPI AG
series Mathematics
issn 2227-7390
publishDate 2018-04-01
description Predicting how a genetic change affects a given character is a major challenge in biology, and being able to tackle this problem relies on our ability to develop realistic models of gene networks. However, such models are rarely tractable mathematically. In this paper, we propose a mathematical analysis of the sigmoid variant of the Wagner gene-network model. By considering the simplest case, that is, one unique self-regulating gene, we show that numerical simulations are not the only tool available to study such models: theoretical studies can be done too, by mathematical analysis of discrete dynamical systems. It is first shown that the particular sigmoid function can be theoretically investigated. Secondly, we provide an illustration of how to apply such investigations in the case of the dynamical system representing the one self-regulating gene. In this context, we focused on the composite function f a ( m . x ) where f a is the parametric sigmoid function and m is a scalar not in { 0 , 1 } and we have proven that the number of fixed-point can be deduced theoretically, according to the values of a and m.
topic gene-network model
Wagner model
discrete dynamical systems
url http://www.mdpi.com/2227-7390/6/4/58
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