Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mapping

TOMATO (Total Mapping Toolbox) is a C++ library for the calculation of parametric maps in cardiac magnetic resonance imaging (MRI). As an open source project, TOMATO allows transparent and standardised cardiac longitudinal relaxation time (T1) mapping in clinical applications. With C++ implementatio...

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Main Authors: Konrad Werys, Iulius Dragonu, Qiang Zhang, Iulia Popescu, Evan Hann, Henrike Puchta, Agata Kubik, Dogan Polat, Cody Wu, Niall O. Moon, Ahmet Barutcu, Vanessa M. Ferreira, Stefan K. Piechnik
Format: Article
Language:English
Published: Elsevier 2020-01-01
Series:SoftwareX
Subjects:
T1
Online Access:http://www.sciencedirect.com/science/article/pii/S2352711019302225
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spelling doaj-23bba4aadf00479eb4fcfa54a2e8bddc2020-11-25T03:14:07ZengElsevierSoftwareX2352-71102020-01-0111Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mappingKonrad Werys0Iulius Dragonu1Qiang Zhang2Iulia Popescu3Evan Hann4Henrike Puchta5Agata Kubik6Dogan Polat7Cody Wu8Niall O. Moon9Ahmet Barutcu10Vanessa M. Ferreira11Stefan K. Piechnik12Oxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UK; Corresponding author.Siemens Healthcare Ltd, Frimley, UKOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKInstitute of Cardiology, Warsaw, PolandUniversity of Texas Southwestern Medical Center, Department of Radiology, Dallas, TX, USAOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKOxford Centre for Clinical Magnetic Resonance Research, John Radcliffe Hospital, Oxford, UKTOMATO (Total Mapping Toolbox) is a C++ library for the calculation of parametric maps in cardiac magnetic resonance imaging (MRI). As an open source project, TOMATO allows transparent and standardised cardiac longitudinal relaxation time (T1) mapping in clinical applications. With C++ implementation, TOMATO can easily interface and translate between research software environments and commercial vendors’ closed-source C++ environments on scanners as well as post-processing software. To complement the core library implementation, a ready-to-use command line tool has been provided.http://www.sciencedirect.com/science/article/pii/S2352711019302225OptimisationModel fittingParametric mappingLongitudinal relaxation timeT1Magnetic resonance imaging
collection DOAJ
language English
format Article
sources DOAJ
author Konrad Werys
Iulius Dragonu
Qiang Zhang
Iulia Popescu
Evan Hann
Henrike Puchta
Agata Kubik
Dogan Polat
Cody Wu
Niall O. Moon
Ahmet Barutcu
Vanessa M. Ferreira
Stefan K. Piechnik
spellingShingle Konrad Werys
Iulius Dragonu
Qiang Zhang
Iulia Popescu
Evan Hann
Henrike Puchta
Agata Kubik
Dogan Polat
Cody Wu
Niall O. Moon
Ahmet Barutcu
Vanessa M. Ferreira
Stefan K. Piechnik
Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mapping
SoftwareX
Optimisation
Model fitting
Parametric mapping
Longitudinal relaxation time
T1
Magnetic resonance imaging
author_facet Konrad Werys
Iulius Dragonu
Qiang Zhang
Iulia Popescu
Evan Hann
Henrike Puchta
Agata Kubik
Dogan Polat
Cody Wu
Niall O. Moon
Ahmet Barutcu
Vanessa M. Ferreira
Stefan K. Piechnik
author_sort Konrad Werys
title Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mapping
title_short Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mapping
title_full Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mapping
title_fullStr Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mapping
title_full_unstemmed Total Mapping Toolbox (TOMATO): An open source library for cardiac magnetic resonance parametric mapping
title_sort total mapping toolbox (tomato): an open source library for cardiac magnetic resonance parametric mapping
publisher Elsevier
series SoftwareX
issn 2352-7110
publishDate 2020-01-01
description TOMATO (Total Mapping Toolbox) is a C++ library for the calculation of parametric maps in cardiac magnetic resonance imaging (MRI). As an open source project, TOMATO allows transparent and standardised cardiac longitudinal relaxation time (T1) mapping in clinical applications. With C++ implementation, TOMATO can easily interface and translate between research software environments and commercial vendors’ closed-source C++ environments on scanners as well as post-processing software. To complement the core library implementation, a ready-to-use command line tool has been provided.
topic Optimisation
Model fitting
Parametric mapping
Longitudinal relaxation time
T1
Magnetic resonance imaging
url http://www.sciencedirect.com/science/article/pii/S2352711019302225
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