Recognition of interferon-inducible sites, promoters, and enhancers

Recognition of interferon-inducible sites, promoters, and enhancers

<p>Abstract</p> <p>Background</p> <p>Computational analysis of gene regulatory regions is important for prediction of functions of many uncharacterized genes. With this in mind, search of the target genes for interferon (IFN) induction appears of interest. IFNs are mult...

Full description

Bibliographic Details
Main Authors:	Kondrakhin Yury V, Ananko Elena A, Merkulova Tatiana I, Kolchanov Nikolay A
Format:	Article
Language:	English
Published:	BMC 2007-02-01
Series:	BMC Bioinformatics
Online Access:	http://www.biomedcentral.com/1471-2105/8/56

Similar Items

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions
by: Merkulova Tatyana I, et al.
Published: (2007-12-01)

EFFECT OF FLANKING SEQUENCES ON THE ACCURACY OF THE RECOGNITION OF TRANSCRIPTION FACTOR BINDING SITES
by: T. M. Khlebodarova, et al.
Published: (2015-01-01)

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site
by: Grigorovich Dmitry, et al.
Published: (2007-08-01)

Application of alternative <i>de novo</i> motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA2 binding sites
by: A. V. Tsukanov, et al.
Published: (2021-03-01)

Genetic basis of olfactory cognition: extremely high level of DNA sequence polymorphism in promoter regions of the human olfactory receptor genes revealed using the 1000 Genomes Project dataset
by: Elena V. Ignatieva, et al.
Published: (2014-03-01)

Regulatory SNPs: Altered Transcription Factor Binding Sites Implicated in Complex Traits and Diseases
by: Arina O. Degtyareva, et al.
Published: (2021-06-01)

Cognitive Metaphors in the Danube River Concept Sphere (based on story “The Willows” by A. Blackwood)
by: Tatiana Ananko
Published: (2017-10-01)

Human Genes Encoding Transcription Factors and Chromatin-Modifying Proteins Have Low Levels of Promoter Polymorphism: A Study of 1000 Genomes Project Data
by: Elena V. Ignatieva, et al.
Published: (2015-01-01)

Enhancement of interferon treatment for large basaliomas
by: A. V. Molochkov, et al.
Published: (2017-08-01)

Enhanced expression of interferon-induced protein with tetratricopeptide repeats 5 promotes migration and invasion of hepatocellular carcinoma cells
by: YANG Nan, et al.
Published: (2020-11-01)

The safeguarding of Mixed Sites: from the recognition to the enhancement
by: Roberto Sabelli
Published: (2017-11-01)

Interferon Status and Choice of Interferons Inducers in Frequently Ill Children
by: M. S. Savenkovа, et al.
Published: (2016-06-01)

Splicing Enhancers at Intron–Exon Borders Participate in Acceptor Splice Sites Recognition
by: Tatiana Kováčová, et al.
Published: (2020-09-01)

Influenza Virus Usurps an Interferon-Induced Translational Program to Promote Viral Replication
by: Mitchell P. Ledwith, et al.
Published: (2020-07-01)

<it>Streptococcus pneumoniae </it>nasopharyngeal colonization induces type I interferons and interferon-induced gene expression
by: Falkow Stanley, et al.
Published: (2009-08-01)

DNA-Damage-Induced Type I Interferon Promotes Senescence and Inhibits Stem Cell Function
by: Qiujing Yu, et al.
Published: (2015-05-01)

Regulation of the human interferon-b promoter
by: Xanthoudakis, Steven
Published: (1990)

Regulation of the human beta-interferon promoter
by: Eloranta, Jyrki Johannes
Published: (1995)

SOIL-LANDSCAPE PECULIAR AREAS IN THE NORTH OF CENTRAL SIBERIA (ACCORDING TO INTERPRETATION OF SPACE-BORNE IMAGES)
by: T. V. Ananko
Published: (2014-04-01)

Characterising the molecular defect in interferon production in asthma : pathogen recognition receptors and interferon responses to rhinovirus in asthma
by: Sykes, Annemarie
Published: (2010)

Recruitment of histone deacetylase 3 to the interferon-A gene promoters attenuates interferon expression.
by: Pierre Génin, et al.
Published: (2012-01-01)

Promoter Polymorphisms in Interferon Regulatory Factor 5
by: Clark, Daniel N.
Published: (2013)

Pegylated interferon, but not conventional interferon therapy induced severe skin lesions
by: Zhengxiao Li, et al.
Published: (2012-07-01)

Interferon-Induced Status Epilepticus
by: J Gordon Millichap
Published: (1994-03-01)

SURFACE PLASMON RESONANCE STUDY OF THE INTERACTION BETWEEN THE HUMAN TATA-BOX BINDING PROTEIN AND THE TATA ELEMENT OF THE NOS2A GENE PROMOTER
by: I. A. Drachkova, et al.
Published: (2014-12-01)

Activation of interferon regulatory factor 5 by site specific phosphorylation.
by: Hui-Chen Chang Foreman, et al.
Published: (2012-01-01)

Interferons: the Nature, Mechanisms of Action and Clinical Use of Interferon Preparations
by: I.V. Dziublyk
Published: (2016-08-01)

Interferon-gamma promotes infection of astrocytes by Trypanosoma cruzi.
by: Rafael Rodrigues Silva, et al.
Published: (2015-01-01)

Hyercalcemia induced by interferon therapy in chronic hepatitis C
by: Waleed I Albaker
Published: (2012-01-01)

Multi-site spinal stimulation strategies to enhance locomotion after paralysis
by: Prithvi K Shah, et al.
Published: (2016-01-01)

Knockdown of menin affects pre-mRNA processing and promoter fidelity at the interferon-gamma inducible <it>IRF1 </it>gene
by: Auriemma Lauren B, et al.
Published: (2012-01-01)

Histone H2B-IFI16 Recognition of Nuclear Herpesviral Genome Induces Cytoplasmic Interferon-β Responses.
by: Jawed Iqbal, et al.
Published: (2016-10-01)

Interferon Induced Focal Segmental Glomerulosclerosis
by: Yusuf Kayar, et al.
Published: (2016-01-01)

Expression of the Interferon-inducible Mx gene
by: Chang, Kim Chow
Published: (2009)

Interleukin 21 collaborates with interferon-γ for the optimal expression of interferon-stimulated genes and enhances protection against enteric microbial infection.
by: Shahram Solaymani-Mohammadi, et al.
Published: (2019-02-01)

EFFECT OF DEXAMETHASONE ON INTERFERON-α-INDUCED DIFFERENTIATION OF MONOCYTES TO DENDRITIC CELLS
by: Yu. D. Kurochkina, et al.
Published: (2016-08-01)

Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data.
by: Ruslan N Sharipov, et al.
Published: (2020-01-01)

Repeated exposure to Lutzomyia intermedia sand fly saliva induces local expression of interferon-inducible genes both at the site of injection in mice and in human blood.
by: Tiffany Weinkopff, et al.
Published: (2014-01-01)

Autologous Enhancement by Interferon of Natural Killer Activity of Human Peripheral Blood Lymphocytes
by: S. B. Cheknev, et al.
Published: (1994-01-01)

Candidate SNP Markers of Familial and Sporadic Alzheimer's Diseases Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters
by: Petr Ponomarenko, et al.
Published: (2017-07-01)