Binning sequences using very sparse labels within a metagenome
<p>Abstract</p> <p>Background</p> <p>In metagenomic studies, a process called binning is necessary to assign contigs that belong to multiple species to their respective phylogenetic groups. Most of the current methods of binning, such as BLAST, <it>k</it>-me...
Main Authors: | Halgamuge Saman K, Hsu Arthur L, Chan Chon-Kit, Tang Sen-Lin |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2008-04-01
|
Series: | BMC Bioinformatics |
Online Access: | http://www.biomedcentral.com/1471-2105/9/215 |
Similar Items
-
Using Growing Self-Organising Maps to Improve the Binning Process in Environmental Whole-Genome Shotgun Sequencing
by: Chon-Kit Kenneth Chan, et al.
Published: (2008-01-01) -
The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments
by: Halgamuge Saman K, et al.
Published: (2009-12-01) -
CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision
by: Damayanthi Herath, et al.
Published: (2017-12-01) -
Binning and annotation for metagenomic next-generation sequencing reads
by: Wang, Yi, et al.
Published: (2015) -
MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins
by: Deyvid Amgarten, et al.
Published: (2018-08-01)