The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient Cohort
Colorectal cancers arising via the serrated pathway are often associated with BRAF V600E mutation, CpG island methylator phenotype (CIMP), and microsatellite instability. Previous studies have shown a strong association between BRAF V600E mutation and serrated polyps. This study aims to evaluate CIM...
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doaj-2012355983084e0186087992b035d6252020-11-24T23:43:25ZengHindawi LimitedGastroenterology Research and Practice1687-61211687-630X2014-01-01201410.1155/2014/374926374926The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient CohortWinnie C. Fernando0Mariska S. Miranda1Daniel L. Worthley2Kazutomo Togashi3Dianne J. Watters4Barbara A. Leggett5Kevin J. Spring6Conjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, AustraliaConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, AustraliaConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, AustraliaDepartment of Coloproctology, Aizu Medical Center, Fukushima Medical University, Fukushima 960-1295, JapanSchool of Biomolecular and Physical Sciences and Eskitis Institute for Drug Discovery, Griffith University, Brisbane, QLD 4111, AustraliaConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, AustraliaConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, AustraliaColorectal cancers arising via the serrated pathway are often associated with BRAF V600E mutation, CpG island methylator phenotype (CIMP), and microsatellite instability. Previous studies have shown a strong association between BRAF V600E mutation and serrated polyps. This study aims to evaluate CIMP status of all the serrated polyp subtypes and its association with functionally important genes such as MLH1, p16, and IGFBP7. CIMP status and methylation were evaluated using the real-time based MethyLight assay in 154 serrated polyps and 63 conventional adenomas. Results showed that CIMP-high serrated polyps were strongly associated with BRAF mutation and proximal colon. CIMP-high was uncommon in conventional adenomas (1.59%), occurred in 8.25% of hyperplastic polyps (HPs), and became common in sessile serrated adenomas (SSAs) (51.43%). MLH1 methylation was mainly observed in the proximal colon and was significantly associated with BRAF mutation and CIMP-high. The number of samples methylated for p16 and IGFBP7 was the highest in SSAs. The methylation panel we used to detect CIMP is highly specific for CIMP-high cancers. With this panel, we demonstrate that CIMP-high is much more common in SSAs than HPs. This suggests that CIMP-high correlates with increased risk of malignant transformation which was also observed in methylation of functionally important genes.http://dx.doi.org/10.1155/2014/374926 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Winnie C. Fernando Mariska S. Miranda Daniel L. Worthley Kazutomo Togashi Dianne J. Watters Barbara A. Leggett Kevin J. Spring |
spellingShingle |
Winnie C. Fernando Mariska S. Miranda Daniel L. Worthley Kazutomo Togashi Dianne J. Watters Barbara A. Leggett Kevin J. Spring The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient Cohort Gastroenterology Research and Practice |
author_facet |
Winnie C. Fernando Mariska S. Miranda Daniel L. Worthley Kazutomo Togashi Dianne J. Watters Barbara A. Leggett Kevin J. Spring |
author_sort |
Winnie C. Fernando |
title |
The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient Cohort |
title_short |
The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient Cohort |
title_full |
The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient Cohort |
title_fullStr |
The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient Cohort |
title_full_unstemmed |
The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient Cohort |
title_sort |
cimp phenotype in braf mutant serrated polyps from a prospective colonoscopy patient cohort |
publisher |
Hindawi Limited |
series |
Gastroenterology Research and Practice |
issn |
1687-6121 1687-630X |
publishDate |
2014-01-01 |
description |
Colorectal cancers arising via the serrated pathway are often associated with BRAF V600E mutation, CpG island methylator phenotype (CIMP), and microsatellite instability. Previous studies have shown a strong association between BRAF V600E mutation and serrated polyps. This study aims to evaluate CIMP status of all the serrated polyp subtypes and its association with functionally important genes such as MLH1, p16, and IGFBP7. CIMP status and methylation were evaluated using the real-time based MethyLight assay in 154 serrated polyps and 63 conventional adenomas. Results showed that CIMP-high serrated polyps were strongly associated with BRAF mutation and proximal colon. CIMP-high was uncommon in conventional adenomas (1.59%), occurred in 8.25% of hyperplastic polyps (HPs), and became common in sessile serrated adenomas (SSAs) (51.43%). MLH1 methylation was mainly observed in the proximal colon and was significantly associated with BRAF mutation and CIMP-high. The number of samples methylated for p16 and IGFBP7 was the highest in SSAs. The methylation panel we used to detect CIMP is highly specific for CIMP-high cancers. With this panel, we demonstrate that CIMP-high is much more common in SSAs than HPs. This suggests that CIMP-high correlates with increased risk of malignant transformation which was also observed in methylation of functionally important genes. |
url |
http://dx.doi.org/10.1155/2014/374926 |
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