Identification of key genes in allergic rhinitis by bioinformatics analysis

• Main Authors: Yunfei Zhang, Yue Huang, Wen-xia Chen, Zheng-min Xu
• Format: Article
• Language: English
• Published: SAGE Publishing 2021-07-01
• Series: Journal of International Medical Research
• Online Access: https://doi.org/10.1177/03000605211029521

Objective This study aimed to explore the potential molecular mechanism of allergic rhinitis (AR) and identify gene signatures by analyzing microarray data using bioinformatics methods. Methods The dataset GSE19187 was used to screen differentially expressed genes (DEGs) between samples from patients with AR and healthy controls. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were applied for the DEGs. Subsequently, a protein–protein interaction (PPI) network was constructed to identify hub genes. GSE44037 and GSE43523 datasets were screened to validate critical genes. Results A total of 156 DEGs were identified. GO analysis verified that the DEGs were enriched in antigen processing and presentation, the immune response, and antigen binding. KEGG analysis demonstrated that the DEGs were enriched in Staphylococcus aureus infection, rheumatoid arthritis, and allograft rejection. PPI network and module analysis predicted seven hub genes, of which six ( CD44 , HLA-DPA1 , HLA-DRB1 , HLA-DRB5 , MUC5B , and CD274 ) were identified in the validation dataset. Conclusions Our findings suggest that hub genes play important roles in the development of AR.