In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging

This paper proposes to study the potentialities of on-board colour imaging for the in-field detection of a textbook case disease: the grapevine downy mildew. It introduces an algorithmic strategy for the detection of various forms of foliar symptoms on proximal high-resolution images. The proposed s...

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Main Authors: Florent Abdelghafour, Barna Keresztes, Christian Germain, Jean-Pierre Da Costa
Format: Article
Language:English
Published: MDPI AG 2020-08-01
Series:Sensors
Subjects:
Online Access:https://www.mdpi.com/1424-8220/20/16/4380
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spelling doaj-1cca92cc300644e3b531e5f8876655122020-11-25T03:17:39ZengMDPI AGSensors1424-82202020-08-01204380438010.3390/s20164380In Field Detection of Downy Mildew Symptoms with Proximal Colour ImagingFlorent Abdelghafour0Barna Keresztes1Christian Germain2Jean-Pierre Da Costa3ITAP, Univ. Montpellier, INRAE, Institut Agro—SupAgro, F-34196 Montpellier, France 2 Univ. Bordeaux, IMS UMR 5218, F-33405 Talence, FranceUniv. Bordeaux, IMS UMR 5218, F-33405 Talence, FranceUniv. Bordeaux, IMS UMR 5218, F-33405 Talence, FranceUniv. Bordeaux, IMS UMR 5218, F-33405 Talence, FranceThis paper proposes to study the potentialities of on-board colour imaging for the in-field detection of a textbook case disease: the grapevine downy mildew. It introduces an algorithmic strategy for the detection of various forms of foliar symptoms on proximal high-resolution images. The proposed strategy is based on structure–colour representations and probabilistic models of grapevine tissues. It operates in three steps: (i) Formulating descriptors to extract the characteristic and discriminating properties of each class. They combine the Local Structure Tensors (LST) with colorimetric statistics calculated in pixel’s neighbourhood. (ii) Modelling the statistical distributions of these descriptors in each class. To account for the specific nature of LSTs, the descriptors are mapped in the Log-Euclidean space. In this space, the classes of interest can be modelled with mixtures of multivariate Gaussian distributions. (iii) Assigning each pixel to one of the classes according to its suitability to their models. The decision method is based on a “seed growth segmentation” process. This step exploits statistical criteria derived from the probabilistic model. The resulting processing chain reliably detects downy mildew symptoms and estimates the area of the affected tissues. A leave-one-out cross-validation is conducted on a dataset constituted of a hundred independent images of grapevines affected only by downy mildew and/or abiotic stresses. The proposed method achieves an extensive and accurate recovery of foliar symptoms, with on average, a 83% pixel-wise precision and a 76% pixel-wise recall.https://www.mdpi.com/1424-8220/20/16/4380proximal sensingdowny mildewparametric classificationstructure tensorseed growth segmentation
collection DOAJ
language English
format Article
sources DOAJ
author Florent Abdelghafour
Barna Keresztes
Christian Germain
Jean-Pierre Da Costa
spellingShingle Florent Abdelghafour
Barna Keresztes
Christian Germain
Jean-Pierre Da Costa
In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
Sensors
proximal sensing
downy mildew
parametric classification
structure tensor
seed growth segmentation
author_facet Florent Abdelghafour
Barna Keresztes
Christian Germain
Jean-Pierre Da Costa
author_sort Florent Abdelghafour
title In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_short In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_full In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_fullStr In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_full_unstemmed In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_sort in field detection of downy mildew symptoms with proximal colour imaging
publisher MDPI AG
series Sensors
issn 1424-8220
publishDate 2020-08-01
description This paper proposes to study the potentialities of on-board colour imaging for the in-field detection of a textbook case disease: the grapevine downy mildew. It introduces an algorithmic strategy for the detection of various forms of foliar symptoms on proximal high-resolution images. The proposed strategy is based on structure–colour representations and probabilistic models of grapevine tissues. It operates in three steps: (i) Formulating descriptors to extract the characteristic and discriminating properties of each class. They combine the Local Structure Tensors (LST) with colorimetric statistics calculated in pixel’s neighbourhood. (ii) Modelling the statistical distributions of these descriptors in each class. To account for the specific nature of LSTs, the descriptors are mapped in the Log-Euclidean space. In this space, the classes of interest can be modelled with mixtures of multivariate Gaussian distributions. (iii) Assigning each pixel to one of the classes according to its suitability to their models. The decision method is based on a “seed growth segmentation” process. This step exploits statistical criteria derived from the probabilistic model. The resulting processing chain reliably detects downy mildew symptoms and estimates the area of the affected tissues. A leave-one-out cross-validation is conducted on a dataset constituted of a hundred independent images of grapevines affected only by downy mildew and/or abiotic stresses. The proposed method achieves an extensive and accurate recovery of foliar symptoms, with on average, a 83% pixel-wise precision and a 76% pixel-wise recall.
topic proximal sensing
downy mildew
parametric classification
structure tensor
seed growth segmentation
url https://www.mdpi.com/1424-8220/20/16/4380
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AT christiangermain infielddetectionofdownymildewsymptomswithproximalcolourimaging
AT jeanpierredacosta infielddetectionofdownymildewsymptomswithproximalcolourimaging
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