Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analyses of pooled RNA-Seq samples in rainbow trout

Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analyses of pooled RNA-Seq samples in rainbow trout

Abstract Background Coding/functional SNPs change the biological function of a gene and, therefore, could serve as “large-effect” genetic markers. In this study, we used two bioinformatics pipelines, GATK and SAMtools, for discovering coding/functional SNPs with allelic-imbalances associated with to...

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Bibliographic Details
Main Authors: Rafet Al-Tobasei, Ali Ali, Timothy D. Leeds, Sixin Liu, Yniv Palti, Brett Kenney, Mohamed Salem
Format: Article
Language:English
Published: BMC 2017-08-01
Series:BMC Genomics
Subjects:
Rainbow trout
Fish
SNPs
Genetic markers
RNA-Seq
Online Access:http://link.springer.com/article/10.1186/s12864-017-3992-z

Internet

http://link.springer.com/article/10.1186/s12864-017-3992-z

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