Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China

Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China

Complete genome sequence of Potato virus Y Liaoning isolate (PVY-LN) causing tobacco vein necrosis symptoms were isolated from Liaoning Province in China. Genome sequences of PVY-LN was 9714 nucleotides in length, excluding the 3′-terminal poly (A) tail. PVY-LN encodes a single long open reading fra...

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Main Authors: Fang WANG, Zheng-liang GAO, Meng-nan AN, Ben-guo ZHOU, Yuan-hua WU
Format: Article
Language:English
Published: Elsevier 2013-07-01
Series:Journal of Integrative Agriculture
Subjects:
PVY Liaoning isolate
cloning
genome sequencing
phylogeny
Online Access:http://www.sciencedirect.com/science/article/pii/S2095311913604426
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spelling doaj-1b1a4dd3eb3742fb8258e9854d335c642021-06-07T06:48:58ZengElsevierJournal of Integrative Agriculture2095-31192013-07-0112711951200Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in ChinaFang WANG0Zheng-liang GAO1Meng-nan AN2Ben-guo ZHOU3Yuan-hua WU4College of Plant Protection, Shenyang Agricultural University, Shenyang 110866, P.R. China; Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei 230031, P.R. China; WANG Fang, Tel: +86-551-65148963, Fax: +86-551-65148963Tobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei 230031, P.R. ChinaCollege of Plant Protection, Shenyang Agricultural University, Shenyang 110866, P.R. ChinaTobacco Research Institute, Anhui Academy of Agricultural Sciences, Hefei 230031, P.R. ChinaCollege of Plant Protection, Shenyang Agricultural University, Shenyang 110866, P.R. China; WU Yuan-hua, Tel: +86-24-88487359, Fax: +86-24-88487359Complete genome sequence of Potato virus Y Liaoning isolate (PVY-LN) causing tobacco vein necrosis symptoms were isolated from Liaoning Province in China. Genome sequences of PVY-LN was 9714 nucleotides in length, excluding the 3′-terminal poly (A) tail. PVY-LN encodes a single long open reading frame (ORF) of polyprotein that is predicted to be cleaved into ten mature proteins by three viral proteases. No recombination can be predicted in PVY-LN sequences compared with that of the other PVY strains using Recombination Detection Programe v. 4.16 (RDP4). Complete genome sequence comparison and phylogenetic analysis indicated that PVY-LN is closely related to PVY necrosis strain (PVYN).http://www.sciencedirect.com/science/article/pii/S2095311913604426PVY Liaoning isolatecloninggenome sequencingphylogeny
collection DOAJ
language English
format Article
sources DOAJ
author Fang WANG
Zheng-liang GAO
Meng-nan AN
Ben-guo ZHOU
Yuan-hua WU
spellingShingle Fang WANG
Zheng-liang GAO
Meng-nan AN
Ben-guo ZHOU
Yuan-hua WU
Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
Journal of Integrative Agriculture
PVY Liaoning isolate
cloning
genome sequencing
phylogeny
author_facet Fang WANG
Zheng-liang GAO
Meng-nan AN
Ben-guo ZHOU
Yuan-hua WU
author_sort Fang WANG
title Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
title_short Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
title_full Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
title_fullStr Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
title_full_unstemmed Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
title_sort sequencing and phylogenetic analysis of potato virus y liaoning isolate in china
publisher Elsevier
series Journal of Integrative Agriculture
issn 2095-3119
publishDate 2013-07-01
description Complete genome sequence of Potato virus Y Liaoning isolate (PVY-LN) causing tobacco vein necrosis symptoms were isolated from Liaoning Province in China. Genome sequences of PVY-LN was 9714 nucleotides in length, excluding the 3′-terminal poly (A) tail. PVY-LN encodes a single long open reading frame (ORF) of polyprotein that is predicted to be cleaved into ten mature proteins by three viral proteases. No recombination can be predicted in PVY-LN sequences compared with that of the other PVY strains using Recombination Detection Programe v. 4.16 (RDP4). Complete genome sequence comparison and phylogenetic analysis indicated that PVY-LN is closely related to PVY necrosis strain (PVYN).
topic PVY Liaoning isolate
cloning
genome sequencing
phylogeny
url http://www.sciencedirect.com/science/article/pii/S2095311913604426
work_keys_str_mv AT fangwang sequencingandphylogeneticanalysisofpotatovirusyliaoningisolateinchina
AT zhenglianggao sequencingandphylogeneticanalysisofpotatovirusyliaoningisolateinchina
AT mengnanan sequencingandphylogeneticanalysisofpotatovirusyliaoningisolateinchina
AT benguozhou sequencingandphylogeneticanalysisofpotatovirusyliaoningisolateinchina
AT yuanhuawu sequencingandphylogeneticanalysisofpotatovirusyliaoningisolateinchina
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