Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS
Background: Human plasma butyrylcholinesterase (hBChE, EC 3.1.1.8) is an endogenous bioscavenger that hydrolyzes numerous medicamentous and poisonous esters and scavenges potent organophosphorus nerve agents. Thus, the hBChE can be used to protect acetylcholinesterase as well as a marker for diagnos...
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doaj-1a510888dc1f4c52882f5f7e2cca09752020-11-24T21:21:54ZengInternational Medical Research and Development CorporationInternational Journal of Biomedicine2158-05102158-05292019-06-019Suppl_1S14S1510.21103/IJBM.9.Suppl_1.OR21Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXSKonstantin M. Boyko0Timur N. Baymukhametov1Yury M. Chesnokov2Michael Hons3Sofya V. Lushchekina4Alexey V. Lipkin5Vladimir O. Popov6Michail V. Kovalchuk7Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, RussiaNational Research Center «Kurchatov Institute», Moscow, RussiaNational Research Center «Kurchatov Institute», Moscow, RussiaEMBL Grenoble, Grenoble, FranceEmanuel Institute of Biochemical Physics, Russian Academy of Sciences, Moscow, Russian FederationBach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, RussiaBach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia; National Research Center «Kurchatov Institute», Moscow, RussiaNational Research Center «Kurchatov Institute», Moscow, RussiaBackground: Human plasma butyrylcholinesterase (hBChE, EC 3.1.1.8) is an endogenous bioscavenger that hydrolyzes numerous medicamentous and poisonous esters and scavenges potent organophosphorus nerve agents. Thus, the hBChE can be used to protect acetylcholinesterase as well as a marker for diagnosis of OP poisoning. It is also considered as a therapeutic target against Alzheimer’s disease. Though the X-ray structure of a partially deglycosylated monomer of human hBChE was solved 15 years ago, all attempts to determine the 3D structure of the natural full-length glycosylated tetrameric human hBChE were unsuccessful so far. Methods: A combination of three complementary structural methods – single particle cryo-electron microscopy, molecular dynamic simulations and small-angle X-ray scattering were implemented to elucidate the overall structural and spatial organization of the natural tetrameric human plasma hBChE. Results: A 7.6 Å cryo-EM map clearly shows the structural organization of the enzyme: a dimer of dimers with a non-planar monomer arrangement in which the interconnecting super helix complex PRAD-(WAT)4-peptide C-terminal tail is located in the center of the tetramer, nearly perpendicular to its plane and deeply plunged between the four subunits. Time-averaged molecular dynamics trajectories allowed to optimize the geometry of the molecule and to reconstruct structural features obscured in the cryoEM density, e.g glycan chains and glycan inter-dimer contact areas as well as inter-monomer disulfide bridges at the C-terminal tail. Finally, SAXS data confirmed the consistency of the obtained model with the experimental data. Conclusion: The 3D structure of human tetrameric butyrylcholinesterase, obtained for the first time using a combination of complementary structural methods, revealed unique quaternary organization distinct from the model proposed previously.http://ijbm.org/articles/IJBM_2019_9_S1_OR21.pdfbutyrylcholinesterasetetramercryo-EMbioscavenger |
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DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Konstantin M. Boyko Timur N. Baymukhametov Yury M. Chesnokov Michael Hons Sofya V. Lushchekina Alexey V. Lipkin Vladimir O. Popov Michail V. Kovalchuk |
spellingShingle |
Konstantin M. Boyko Timur N. Baymukhametov Yury M. Chesnokov Michael Hons Sofya V. Lushchekina Alexey V. Lipkin Vladimir O. Popov Michail V. Kovalchuk Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS International Journal of Biomedicine butyrylcholinesterase tetramer cryo-EM bioscavenger |
author_facet |
Konstantin M. Boyko Timur N. Baymukhametov Yury M. Chesnokov Michael Hons Sofya V. Lushchekina Alexey V. Lipkin Vladimir O. Popov Michail V. Kovalchuk |
author_sort |
Konstantin M. Boyko |
title |
Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS |
title_short |
Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS |
title_full |
Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS |
title_fullStr |
Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS |
title_full_unstemmed |
Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS |
title_sort |
abstract or-21: 3d structure of the natural tetrameric form of human butyryl-cholinesterase as revealed by cryo-em, md and saxs |
publisher |
International Medical Research and Development Corporation |
series |
International Journal of Biomedicine |
issn |
2158-0510 2158-0529 |
publishDate |
2019-06-01 |
description |
Background: Human plasma butyrylcholinesterase (hBChE, EC 3.1.1.8) is an endogenous bioscavenger that hydrolyzes numerous medicamentous and poisonous esters and scavenges potent organophosphorus nerve agents. Thus, the hBChE can be used to protect acetylcholinesterase as well as a marker for diagnosis of OP poisoning. It is also considered as a therapeutic target against Alzheimer’s disease. Though the X-ray structure of a partially deglycosylated monomer of human hBChE was solved 15 years ago, all attempts to determine the 3D structure of the natural full-length glycosylated tetrameric human hBChE were unsuccessful so far.
Methods: A combination of three complementary structural methods – single particle cryo-electron microscopy, molecular dynamic simulations and small-angle X-ray scattering were implemented to elucidate the overall structural and spatial organization of the natural tetrameric human plasma hBChE.
Results: A 7.6 Å cryo-EM map clearly shows the structural organization of the enzyme: a dimer of dimers with a non-planar monomer arrangement in which the interconnecting super helix complex PRAD-(WAT)4-peptide C-terminal tail is located in the center of the tetramer, nearly perpendicular to its plane and deeply plunged between the four subunits. Time-averaged molecular dynamics trajectories allowed to optimize the geometry of the molecule and to reconstruct structural features obscured in the cryoEM density, e.g glycan chains and glycan inter-dimer contact areas as well as inter-monomer disulfide bridges at the C-terminal tail. Finally, SAXS data confirmed the consistency of the obtained model with the experimental data.
Conclusion: The 3D structure of human tetrameric butyrylcholinesterase, obtained for the first time using a combination of complementary structural methods, revealed unique quaternary organization distinct from the model proposed previously. |
topic |
butyrylcholinesterase tetramer cryo-EM bioscavenger |
url |
http://ijbm.org/articles/IJBM_2019_9_S1_OR21.pdf |
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