Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS

Background: Human plasma butyrylcholinesterase (hBChE, EC 3.1.1.8) is an endogenous bioscavenger that hydrolyzes numerous medicamentous and poisonous esters and scavenges potent organophosphorus nerve agents. Thus, the hBChE can be used to protect acetylcholinesterase as well as a marker for diagnos...

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Main Authors: Konstantin M. Boyko, Timur N. Baymukhametov, Yury M. Chesnokov, Michael Hons, Sofya V. Lushchekina, Alexey V. Lipkin, Vladimir O. Popov, Michail V. Kovalchuk
Format: Article
Language:English
Published: International Medical Research and Development Corporation 2019-06-01
Series:International Journal of Biomedicine
Subjects:
Online Access:http://ijbm.org/articles/IJBM_2019_9_S1_OR21.pdf
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spelling doaj-1a510888dc1f4c52882f5f7e2cca09752020-11-24T21:21:54ZengInternational Medical Research and Development CorporationInternational Journal of Biomedicine2158-05102158-05292019-06-019Suppl_1S14S1510.21103/IJBM.9.Suppl_1.OR21Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXSKonstantin M. Boyko0Timur N. Baymukhametov1Yury M. Chesnokov2Michael Hons3Sofya V. Lushchekina4Alexey V. Lipkin5Vladimir O. Popov6Michail V. Kovalchuk7Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, RussiaNational Research Center «Kurchatov Institute», Moscow, RussiaNational Research Center «Kurchatov Institute», Moscow, RussiaEMBL Grenoble, Grenoble, FranceEmanuel Institute of Biochemical Physics, Russian Academy of Sciences, Moscow, Russian FederationBach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, RussiaBach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia; National Research Center «Kurchatov Institute», Moscow, RussiaNational Research Center «Kurchatov Institute», Moscow, RussiaBackground: Human plasma butyrylcholinesterase (hBChE, EC 3.1.1.8) is an endogenous bioscavenger that hydrolyzes numerous medicamentous and poisonous esters and scavenges potent organophosphorus nerve agents. Thus, the hBChE can be used to protect acetylcholinesterase as well as a marker for diagnosis of OP poisoning. It is also considered as a therapeutic target against Alzheimer’s disease. Though the X-ray structure of a partially deglycosylated monomer of human hBChE was solved 15 years ago, all attempts to determine the 3D structure of the natural full-length glycosylated tetrameric human hBChE were unsuccessful so far. Methods: A combination of three complementary structural methods – single particle cryo-electron microscopy, molecular dynamic simulations and small-angle X-ray scattering were implemented to elucidate the overall structural and spatial organization of the natural tetrameric human plasma hBChE. Results: A 7.6 Å cryo-EM map clearly shows the structural organization of the enzyme: a dimer of dimers with a non-planar monomer arrangement in which the interconnecting super helix complex PRAD-(WAT)4-peptide C-terminal tail is located in the center of the tetramer, nearly perpendicular to its plane and deeply plunged between the four subunits. Time-averaged molecular dynamics trajectories allowed to optimize the geometry of the molecule and to reconstruct structural features obscured in the cryoEM density, e.g glycan chains and glycan inter-dimer contact areas as well as inter-monomer disulfide bridges at the C-terminal tail. Finally, SAXS data confirmed the consistency of the obtained model with the experimental data. Conclusion: The 3D structure of human tetrameric butyrylcholinesterase, obtained for the first time using a combination of complementary structural methods, revealed unique quaternary organization distinct from the model proposed previously.http://ijbm.org/articles/IJBM_2019_9_S1_OR21.pdfbutyrylcholinesterasetetramercryo-EMbioscavenger
collection DOAJ
language English
format Article
sources DOAJ
author Konstantin M. Boyko
Timur N. Baymukhametov
Yury M. Chesnokov
Michael Hons
Sofya V. Lushchekina
Alexey V. Lipkin
Vladimir O. Popov
Michail V. Kovalchuk
spellingShingle Konstantin M. Boyko
Timur N. Baymukhametov
Yury M. Chesnokov
Michael Hons
Sofya V. Lushchekina
Alexey V. Lipkin
Vladimir O. Popov
Michail V. Kovalchuk
Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS
International Journal of Biomedicine
butyrylcholinesterase
tetramer
cryo-EM
bioscavenger
author_facet Konstantin M. Boyko
Timur N. Baymukhametov
Yury M. Chesnokov
Michael Hons
Sofya V. Lushchekina
Alexey V. Lipkin
Vladimir O. Popov
Michail V. Kovalchuk
author_sort Konstantin M. Boyko
title Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS
title_short Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS
title_full Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS
title_fullStr Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS
title_full_unstemmed Abstract OR-21: 3D Structure of the Natural Tetrameric Form of Human Butyryl-cholinesterase as Revealed by Cryo-EM, MD and SAXS
title_sort abstract or-21: 3d structure of the natural tetrameric form of human butyryl-cholinesterase as revealed by cryo-em, md and saxs
publisher International Medical Research and Development Corporation
series International Journal of Biomedicine
issn 2158-0510
2158-0529
publishDate 2019-06-01
description Background: Human plasma butyrylcholinesterase (hBChE, EC 3.1.1.8) is an endogenous bioscavenger that hydrolyzes numerous medicamentous and poisonous esters and scavenges potent organophosphorus nerve agents. Thus, the hBChE can be used to protect acetylcholinesterase as well as a marker for diagnosis of OP poisoning. It is also considered as a therapeutic target against Alzheimer’s disease. Though the X-ray structure of a partially deglycosylated monomer of human hBChE was solved 15 years ago, all attempts to determine the 3D structure of the natural full-length glycosylated tetrameric human hBChE were unsuccessful so far. Methods: A combination of three complementary structural methods – single particle cryo-electron microscopy, molecular dynamic simulations and small-angle X-ray scattering were implemented to elucidate the overall structural and spatial organization of the natural tetrameric human plasma hBChE. Results: A 7.6 Å cryo-EM map clearly shows the structural organization of the enzyme: a dimer of dimers with a non-planar monomer arrangement in which the interconnecting super helix complex PRAD-(WAT)4-peptide C-terminal tail is located in the center of the tetramer, nearly perpendicular to its plane and deeply plunged between the four subunits. Time-averaged molecular dynamics trajectories allowed to optimize the geometry of the molecule and to reconstruct structural features obscured in the cryoEM density, e.g glycan chains and glycan inter-dimer contact areas as well as inter-monomer disulfide bridges at the C-terminal tail. Finally, SAXS data confirmed the consistency of the obtained model with the experimental data. Conclusion: The 3D structure of human tetrameric butyrylcholinesterase, obtained for the first time using a combination of complementary structural methods, revealed unique quaternary organization distinct from the model proposed previously.
topic butyrylcholinesterase
tetramer
cryo-EM
bioscavenger
url http://ijbm.org/articles/IJBM_2019_9_S1_OR21.pdf
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