Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions
<p>The species composition of many groups of marine plankton appears well predicted by sea surface temperature (SST). Consequently, fossil plankton assemblages have been widely used to reconstruct past SST. Most applications of this approach make use of the highest possible taxonomic resolutio...
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doaj-1a07e5a4a46a4d1c8addc6d37c2693572020-11-24T20:42:24ZengCopernicus PublicationsClimate of the Past1814-93241814-93322019-05-011588189110.5194/cp-15-881-2019Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functionsL. JonkersM. Kučera<p>The species composition of many groups of marine plankton appears well predicted by sea surface temperature (SST). Consequently, fossil plankton assemblages have been widely used to reconstruct past SST. Most applications of this approach make use of the highest possible taxonomic resolution. However, not all species are sensitive to temperature, and their distribution may be governed by other parameters. There are thus reasons to question the merit of including information about all species, both for transfer function performance and for its effect on reconstructions.</p> <p>Here we investigate the effect of species selection on planktonic foraminifera transfer functions. We assess species importance for transfer function models using a random forest technique and evaluate the performance of models with an increasing number of species. Irrespective of using models that use the entire training set (weighted averaging) or models that use only a subset of the training set (modern analogue technique), we find that the majority of foraminifera species does not carry useful information for temperature reconstruction. Less than one-third of the species in the training set is required to provide a temperature estimate with a prediction error comparable to a transfer function that uses all species in the training set. However, species selection matters for paleotemperature estimates. We find that transfer function models with a different number of species but with the same error may yield different reconstructions of sea surface temperature when applied to the same fossil assemblages. This ambiguity in the reconstructions implies that fossil assemblage change reflects a combination of temperature and other environmental factors. The contribution of the additional factors is site and time specific, indicating ecological and geological complexity in the formation of the sedimentary assemblages. The possibility of obtaining multiple different reconstructions from a single sediment record presents a previously unrecognized source of uncertainty for sea surface temperature estimates based on planktonic foraminifera assemblages. This uncertainty can be evaluated by determining the sensitivity of the reconstructions to species pruning.</p>https://www.clim-past.net/15/881/2019/cp-15-881-2019.pdf |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
L. Jonkers M. Kučera |
spellingShingle |
L. Jonkers M. Kučera Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions Climate of the Past |
author_facet |
L. Jonkers M. Kučera |
author_sort |
L. Jonkers |
title |
Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions |
title_short |
Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions |
title_full |
Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions |
title_fullStr |
Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions |
title_full_unstemmed |
Sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions |
title_sort |
sensitivity to species selection indicates the effect of nuisance variables on marine microfossil transfer functions |
publisher |
Copernicus Publications |
series |
Climate of the Past |
issn |
1814-9324 1814-9332 |
publishDate |
2019-05-01 |
description |
<p>The species composition of many groups of marine plankton appears well
predicted by sea surface temperature (SST). Consequently, fossil plankton
assemblages have been widely used to reconstruct past SST. Most applications
of this approach make use of the highest possible taxonomic resolution.
However, not all species are sensitive to temperature, and their distribution
may be governed by other parameters. There are thus reasons to question the
merit of including information about all species, both for transfer function
performance and for its effect on reconstructions.</p>
<p>Here we investigate the effect of species selection on planktonic
foraminifera transfer functions. We assess species importance for transfer
function models using a random forest technique and evaluate the performance
of models with an increasing number of species. Irrespective of using models
that use the entire training set (weighted averaging) or models that use
only a subset of the training set (modern analogue technique), we find that
the majority of foraminifera species does not carry useful information for
temperature reconstruction. Less than one-third of the species in the
training set is required to provide a temperature estimate with a prediction
error comparable to a transfer function that uses all species in the
training set. However, species selection matters for paleotemperature
estimates. We find that transfer function models with a different number of
species but with the same error may yield different reconstructions of sea
surface temperature when applied to the same fossil assemblages. This
ambiguity in the reconstructions implies that fossil assemblage change
reflects a combination of temperature and other environmental factors. The
contribution of the additional factors is site and time specific, indicating
ecological and geological complexity in the formation of the sedimentary
assemblages. The possibility of obtaining multiple different reconstructions
from a single sediment record presents a previously unrecognized source of
uncertainty for sea surface temperature estimates based on planktonic
foraminifera assemblages. This uncertainty can be evaluated by determining
the sensitivity of the reconstructions to species pruning.</p> |
url |
https://www.clim-past.net/15/881/2019/cp-15-881-2019.pdf |
work_keys_str_mv |
AT ljonkers sensitivitytospeciesselectionindicatestheeffectofnuisancevariablesonmarinemicrofossiltransferfunctions AT mkucera sensitivitytospeciesselectionindicatestheeffectofnuisancevariablesonmarinemicrofossiltransferfunctions |
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