Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder

Serial crystallography (SX) technique using synchrotron X-ray allows the visualization of room-temperature crystal structures with low-dose data collection as well as time-resolved molecular dynamics. In an SX experiment, delivery of numerous crystals for X-ray interaction, in a serial manner, is ve...

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Main Authors: Suk-Youl Park, Hyeongju Choi, Cheolsoo Eo, Yunje Cho, Ki Hyun Nam
Format: Article
Language:English
Published: MDPI AG 2020-09-01
Series:Crystals
Subjects:
Online Access:https://www.mdpi.com/2073-4352/10/9/803
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spelling doaj-18f323bf78a84d13b1069ac14e90aeaf2020-11-25T03:28:48ZengMDPI AGCrystals2073-43522020-09-011080380310.3390/cryst10090803Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample HolderSuk-Youl Park0Hyeongju Choi1Cheolsoo Eo2Yunje Cho3Ki Hyun Nam4Pohang Accelerator Laboratory, Pohang, Gyeongbuk 37673, KoreaPohang Accelerator Laboratory, Pohang, Gyeongbuk 37673, KoreaPohang Accelerator Laboratory, Pohang, Gyeongbuk 37673, KoreaDepartment of Life Science, Pohang University of Science and Technology, Pohang, Gyeongbuk 37673, KoreaDepartment of Life Science, Pohang University of Science and Technology, Pohang, Gyeongbuk 37673, KoreaSerial crystallography (SX) technique using synchrotron X-ray allows the visualization of room-temperature crystal structures with low-dose data collection as well as time-resolved molecular dynamics. In an SX experiment, delivery of numerous crystals for X-ray interaction, in a serial manner, is very important. Fixed-target scanning approach has the advantage of dramatically minimizing sample consumption as well as any physical damage to crystal sample, compared to other sample delivery methods. Here, we introduce the simple approach of fixed-target serial synchrotron crystallography (FT-SSX) using nylon mesh and enclosed film (NAM)-based sample holder. The NAM-based sample holder consisted of X-ray-transparent nylon-mesh and polyimide film, attached to a magnetic base. This sample holder was mounted to a goniometer head on macromolecular crystallography beamline, and translated along vertical and horizontal directions for raster scanning by the goniometer. Diffraction data were collected in two raster scanning approaches: (i) 100 ms X-ray exposure and 0.011° oscillation at each scan point and (ii) 500 ms X-ray exposure and 0.222° oscillation at each scan point. Using this approach, we determined the room-temperature crystal structures of lysozyme and glucose isomerase at 1.5–2.0 Å resolution. The sample holder produced negligible X-ray background scattering for data processing. Therefore, the new approach provided an opportunity to perform FT-SSX with high accessibility using macromolecular crystallography beamlines at synchrotron without any special equipment.https://www.mdpi.com/2073-4352/10/9/803serial crystallographyfixed targetnylon meshenclosed filmroom temperaturelow-dose data collection
collection DOAJ
language English
format Article
sources DOAJ
author Suk-Youl Park
Hyeongju Choi
Cheolsoo Eo
Yunje Cho
Ki Hyun Nam
spellingShingle Suk-Youl Park
Hyeongju Choi
Cheolsoo Eo
Yunje Cho
Ki Hyun Nam
Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
Crystals
serial crystallography
fixed target
nylon mesh
enclosed film
room temperature
low-dose data collection
author_facet Suk-Youl Park
Hyeongju Choi
Cheolsoo Eo
Yunje Cho
Ki Hyun Nam
author_sort Suk-Youl Park
title Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
title_short Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
title_full Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
title_fullStr Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
title_full_unstemmed Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
title_sort fixed-target serial synchrotron crystallography using nylon mesh and enclosed film-based sample holder
publisher MDPI AG
series Crystals
issn 2073-4352
publishDate 2020-09-01
description Serial crystallography (SX) technique using synchrotron X-ray allows the visualization of room-temperature crystal structures with low-dose data collection as well as time-resolved molecular dynamics. In an SX experiment, delivery of numerous crystals for X-ray interaction, in a serial manner, is very important. Fixed-target scanning approach has the advantage of dramatically minimizing sample consumption as well as any physical damage to crystal sample, compared to other sample delivery methods. Here, we introduce the simple approach of fixed-target serial synchrotron crystallography (FT-SSX) using nylon mesh and enclosed film (NAM)-based sample holder. The NAM-based sample holder consisted of X-ray-transparent nylon-mesh and polyimide film, attached to a magnetic base. This sample holder was mounted to a goniometer head on macromolecular crystallography beamline, and translated along vertical and horizontal directions for raster scanning by the goniometer. Diffraction data were collected in two raster scanning approaches: (i) 100 ms X-ray exposure and 0.011° oscillation at each scan point and (ii) 500 ms X-ray exposure and 0.222° oscillation at each scan point. Using this approach, we determined the room-temperature crystal structures of lysozyme and glucose isomerase at 1.5–2.0 Å resolution. The sample holder produced negligible X-ray background scattering for data processing. Therefore, the new approach provided an opportunity to perform FT-SSX with high accessibility using macromolecular crystallography beamlines at synchrotron without any special equipment.
topic serial crystallography
fixed target
nylon mesh
enclosed film
room temperature
low-dose data collection
url https://www.mdpi.com/2073-4352/10/9/803
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