EXFI: Exon and splice graph prediction without a reference genome

EXFI: Exon and splice graph prediction without a reference genome

Abstract For population genetic studies in nonmodel organisms, it is important to use every single source of genomic information. This paper presents EXFI, a Python pipeline that predicts the splice graph and exon sequences using an assembled transcriptome and raw whole‐genome sequencing reads. The...

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Bibliographic Details
Main Authors: Jorge Langa, Andone Estonba, Darrell Conklin
Format: Article
Language:English
Published: Wiley 2020-08-01
Series:Ecology and Evolution
Subjects:
exome sequencing
exon
sequence capture
SNP discovery
splice graph
transcriptome
Online Access:https://doi.org/10.1002/ece3.6587

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