cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]

cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]

Simulation is important in evaluating novel methods when input data is not easily obtainable or specific assumptions are needed. We present cophesim, a software to add the phenotype to generated genotype data prepared with a genetic simulator. The output of cophesim can be used as a direct input for...

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Bibliographic Details
Main Authors: Ilya Y. Zhbannikov, Konstantin G. Arbeev, Anatoliy I. Yashin
Format: Article
Language:English
Published: F1000 Research Ltd 2017-08-01
Series:F1000Research
Subjects:
Bioinformatics
Genomics
Online Access:https://f1000research.com/articles/6-1294/v1
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spelling doaj-14a88603a79f466f84799c312b9a41302020-11-25T03:10:47ZengF1000 Research LtdF1000Research2046-14022017-08-01610.12688/f1000research.11968.112938cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]Ilya Y. Zhbannikov0Konstantin G. Arbeev1Anatoliy I. Yashin2Biodemography of Aging Research Unit (BARU) at Social Sciences Research Institute (SSRI), Duke University, Durham, NC, 27705, USABiodemography of Aging Research Unit (BARU) at Social Sciences Research Institute (SSRI), Duke University, Durham, NC, 27705, USABiodemography of Aging Research Unit (BARU) at Social Sciences Research Institute (SSRI), Duke University, Durham, NC, 27705, USASimulation is important in evaluating novel methods when input data is not easily obtainable or specific assumptions are needed. We present cophesim, a software to add the phenotype to generated genotype data prepared with a genetic simulator. The output of cophesim can be used as a direct input for different genome wide association study tools. cophesim is available from https://bitbucket.org/izhbannikov/cophesim.https://f1000research.com/articles/6-1294/v1BioinformaticsGenomics
collection DOAJ
language English
format Article
sources DOAJ
author Ilya Y. Zhbannikov
Konstantin G. Arbeev
Anatoliy I. Yashin
spellingShingle Ilya Y. Zhbannikov
Konstantin G. Arbeev
Anatoliy I. Yashin
cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]
F1000Research
Bioinformatics
Genomics
author_facet Ilya Y. Zhbannikov
Konstantin G. Arbeev
Anatoliy I. Yashin
author_sort Ilya Y. Zhbannikov
title cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]
title_short cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]
title_full cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]
title_fullStr cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]
title_full_unstemmed cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]
title_sort cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]
publisher F1000 Research Ltd
series F1000Research
issn 2046-1402
publishDate 2017-08-01
description Simulation is important in evaluating novel methods when input data is not easily obtainable or specific assumptions are needed. We present cophesim, a software to add the phenotype to generated genotype data prepared with a genetic simulator. The output of cophesim can be used as a direct input for different genome wide association study tools. cophesim is available from https://bitbucket.org/izhbannikov/cophesim.
topic Bioinformatics
Genomics
url https://f1000research.com/articles/6-1294/v1
work_keys_str_mv AT ilyayzhbannikov cophesimacomprehensivephenotypesimulatorfortestingnovelassociationmethodsversion1referees2approved
AT konstantingarbeev cophesimacomprehensivephenotypesimulatorfortestingnovelassociationmethodsversion1referees2approved
AT anatoliyiyashin cophesimacomprehensivephenotypesimulatorfortestingnovelassociationmethodsversion1referees2approved
_version_ 1724657344297566208

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