Self Organizing Maps to efficiently cluster and functionally interpret protein conformational ensembles

An approach that combines Self-Organizing maps, hierarchical clustering and network components is presented, aimed at comparing protein conformational ensembles obtained from multiple Molecular Dynamic simulations. As a first result the original ensembles can be summarized by using only the represen...

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Bibliographic Details
Main Authors: Fabio Stella, Domenico Fraccalvieri, Laura Bonati
Format: Article
Language:English
Published: Open Publishing Association 2013-09-01
Series:Electronic Proceedings in Theoretical Computer Science
Online Access:http://arxiv.org/pdf/1309.7694v1